Jatropha Genome Database

JcCB0703071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0703071.10 - phase: 0 
         (168 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08529                                                            125   3e-29
KJC_c11056                                                            101   5e-22

>KJC_c08529 
          Length = 473

 Score =  125 bits (63), Expect = 3e-29
 Identities = 111/119 (93%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                       
Query: 47  caaggcaagtgaccttttcgaaaagaagacgagggcttttcaaaaaagctgaggagcttt 106
           ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct: 473 caaggcaagtgaccttttcgaaa-gaagacgagg-cttttcaaaaa-gctgaggagcttt 417

                                                                      
Query: 107 ctgttctttgcgatgctgaggttgctcttatcgttttttctgctactgggaagctattt 165
           |||| ||||||||||||||| |||||||||||  |||| ||||||||||||||||||||
Sbjct: 416 ctgt-ctttgcgatgctgag-ttgctcttatcagtttt-ctgctactgggaagctattt 361


>KJC_c11056 
          Length = 774

 Score =  101 bits (51), Expect = 5e-22
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctagagagaagatcaagatcaagaagattgataacattacagcaaggcaagtgacc 60
           ||||| |||||||||||  |||||||||||||  |||||  ||| || || ||||| || 
Sbjct: 53  atggcgagagagaagattcagatcaagaagatccataacgctaccgctagacaagtcacg 112

                                                                       
Query: 61  ttttcgaaaagaagacgagggcttttcaaaaaagctgaggagctttctgttctttgcgat 120
           ||||| ||| | ||| |||| ||||| || |||||||| |||||||||||||||||||| 
Sbjct: 113 ttttccaaacgcagaagaggcctttttaagaaagctgaagagctttctgttctttgcgac 172

                                              
Query: 121 gctgaggttgctcttatcgttttttctgctactgg 155
           ||||| |||||||||||  | ||||| ||||||||
Sbjct: 173 gctgatgttgctcttattatcttttccgctactgg 207