Jatropha Genome Database

JcCB0696091.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0696091.10 + phase: 0 /pseudo
         (461 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05572                                                            763   0.0  

>KJC_c05572 
          Length = 652

 Score =  763 bits (385), Expect = 0.0
 Identities = 437/453 (96%), Gaps = 16/453 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaaatatcttcaggaccaatcggttcttgctctaaagataatcaaaagatctacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35  atggaaatatcttcaggaccaatcggttcttgctctaaagataatcaaaagatctacctt 94

                                                                       
Query: 61  gagtggtttaattttgctgattcagatggcgatggtcgaattactggcaatgacgctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  gagtggtttaattttgctgattcagatggcgatggtcgaattactggcaatgacgctata 154

                                                                       
Query: 121 aaattttttggcatgtctaatctatctcgacaagatcttaagcaggtt------------ 168
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 155 aaattttttggcatgtctaatctatctcgacaagatcttaagcaggtttgggcaattgca 214

                                                                       
Query: 169 -attctaaacgacaaggatatcttggcttcaatgagtttatcactgctatgcagttaatt 227
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gattctaaacgacaaggatatcttggcttcaatgagtttatcactgctatgcagttaatt 274

                                                                       
Query: 228 tctttagcgcaagcaggacatgaaataactcatgatctcttaaatagtaatattgacttt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctttagcgcaagcaggacatgaaataactcatgatctcttaaatagtaatattgacttt 334

                                                                       
Query: 288 gaaaatttgaaaactccgttcatggacggtttggatttgttgcttgcaaagaaaaagcgt 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 335 gaaaatttgaaaactccgttcatggacggtttggatttgttgcttgcaaag-aaaagcgt 393

                                                                       
Query: 348 ttgtcaaagtcaagtgaacctgatacaaatggtagtcatctagtgcaaccgtcaccttca 407
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttgtc-aagtcaagtgaa-ctgatacaaatggtagtcatctagtgcaaccgtcaccttca 451

                                            
Query: 408 gccaactggttttcttcaaaatcatcaaaaaag 440
           |||||||||||||||||||||||||||||||||
Sbjct: 452 gccaactggttttcttcaaaatcatcaaaaaag 484