Jatropha Genome Database

JcCB0696011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0696011.10 - phase: 1 /partial
         (251 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01718                                                            482   e-136
KJC_s15393                                                            317   7e-87

>KJC_c01718 
          Length = 1336

 Score =  482 bits (243), Expect = e-136
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagaggtggctggtgaagaggagacgaacaaaaatgggagagagattgtgttagggagaa 60
            ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 1205 aagaggtggctggtgaagaggagacgaaacaaaatgggagagagattgtgttagggagaa 1146

                                                                        
Query: 61   acttgcacactgagtgtcttgaggtcacagaaccagatgctaacgatgagcacactggag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 acttgcacactgagtgtcttgaggtcacagaaccagatgctaacgatgagcacactggag 1086

                                                                        
Query: 121  ataaagaagcttatatggctagcgttttggctaggtatagaaagaccttgatggaaagga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 ataaagaagcttatatggctagcgttttggctaggtatagaaagaccttgatggaaagga 1026

                                                                        
Query: 181  caaagcatcatttaggttatccttataatttggatttcgactacggtgctttaggacagt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 caaagcatcatttaggttatccttataatttggatttcgactacggtgctttaggacagt 966

                       
Query: 241  tgcagcatttc 251
            |||||||||||
Sbjct: 965  tgcagcatttc 955


>KJC_s15393 
          Length = 483

 Score =  317 bits (160), Expect = 7e-87
 Identities = 166/168 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaggtggctggtgaagaggagacgaacaaaaatgggagagagattgtgttagggagaa 60
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 118 aagaggtggctggtgaagaggagacgaaacaaaatgggagagagattgtgttagggagaa 177

                                                                       
Query: 61  acttgcacactgagtgtcttgaggtcacagaaccagatgctaacgatgagcacactggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acttgcacactgagtgtcttgaggtcacagaaccagatgctaacgatgagcacactggag 237

                                                           
Query: 121 ataaagaagcttatatggctagcgttttggctaggtatagaaagacct 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ataaagaagcttatatggctagcgttttggctaggtatagaaagacct 285



 Score =  103 bits (52), Expect = 2e-22
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                               
Query: 200 tccttataatttggatttcgactacggtgctttaggacagttgcagcatttc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tccttataatttggatttcgactacggtgctttaggacagttgcagcatttc 350