Jatropha Genome Database

JcCB0693041.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0693041.10 + phase: 0 /pseudo/partial
         (815 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00626                                                            313   4e-85

>KJC_c00626 
          Length = 2027

 Score =  313 bits (158), Expect = 4e-85
 Identities = 432/522 (82%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                        
Query: 295  gatgcattcaagggaattaagcagattggagtcatcggttggggttctcagggtcctgcc 354
            ||||| |||||||| ||||||||||||||||| || || ||||| || ||||| || |||
Sbjct: 1683 gatgctttcaaggggattaagcagattggagttattggctggggatcccaggggccagcc 1624

                                                                        
Query: 355  caagctcaaaatttaagggattctctggccgaagccaagtctgatattacagtaaagatt 414
            ||||| || ||||| ||||||||||| || || || || ||||| ||   ||||||||||
Sbjct: 1623 caagcacagaatttgagggattctcttgctgatgcaaactctgacatcgtagtaaagatt 1564

                                                                        
Query: 415  ggactcaggaagggatcccgttcgtttgctgaagctcgtgctgctggttttaccgaggag 474
            ||  | |||||||| ||||| || |||||||||||||||||||| || || || || |||
Sbjct: 1563 gggttgaggaagggctcccgctcttttgctgaagctcgtgctgcggggttcactgaagag 1504

                                                                        
Query: 475  aatggaacttcaggtgatatatgggaaacgatttcaggcagtgaccttgtgatgctattg 534
            | |||||| |  || || || |||||||| ||| | |||||||| |||||  || |||||
Sbjct: 1503 agtggaacattgggagacatttgggaaactattgctggcagtgatcttgtcttgttattg 1444

                                                                        
Query: 535  atatctgatgcagcacaggccgataattatgaaaaaattttctcctatatgaaaccaaac 594
            || |||||||| || ||||| ||||| ||||| || || |||||  ||||||||||||||
Sbjct: 1443 atttctgatgctgctcaggcagataactatgagaagatattctctcatatgaaaccaaac 1384

                                                                        
Query: 595  agcatacttggactttcccatggatttctacttggccatttacagtcaatgggaattgac 654
            ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||| ||||  |||| 
Sbjct: 1383 agcatccttggcctttcccatggttttcttcttggacatttgcaatcactggggcttgat 1324

                                                                        
Query: 655  ttcccaaaaaacattagtgtgattgctgtgtgtcccaaaggaatgggtccatctgtgaga 714
            || || || ||||| ||||| |||||||| |||||||| |||||||| || |||||  | 
Sbjct: 1323 tttcctaagaacataagtgttattgctgtttgtcccaagggaatggggccttctgttcgt 1264

                                                                        
Query: 715  agactctatgtccaaggcaaagagataaatggtgctggaattaattctagttttgcggtc 774
            || |||||||| || |||||||| ||||||||||| ||||||||||| |||||||| |||
Sbjct: 1263 aggctctatgttcagggcaaagaaataaatggtgcaggaattaattcaagttttgctgtc 1204

                                                      
Query: 775  catcaggatgttgatggtagagcaaca-gatgttgccttggg 815
            || ||||||||||||||||||||  || ||||||||||||||
Sbjct: 1203 caccaggatgttgatggtagagctgcacgatgttgccttggg 1162