Jatropha Genome Database
- JcCB0683911.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0683911.10 + phase: 0 /pseudo/partial
(718 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c10308 876 0.0
KJC_c04172 668 0.0
KJC_c12909 119 1e-26
KJC_c11918 50 7e-06
>KJC_c10308
Length = 461
Score = 876 bits (442), Expect = 0.0
Identities = 442/442 (100%)
Strand = Plus / Minus
Query: 277 agtaatttgttattaaatgcaaattgtgacttgaagatctgtgatttcggtctagctcgg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agtaatttgttattaaatgcaaattgtgacttgaagatctgtgatttcggtctagctcgg 402
Query: 337 ccaacttcagagaatgagtttatgacagaatatgttgtcaccagatggtacagagctcct 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccaacttcagagaatgagtttatgacagaatatgttgtcaccagatggtacagagctcct 342
Query: 397 gaacttttgctcaactcttcagactacactgctgcaatagacgtgtggtcagttggttgc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaacttttgctcaactcttcagactacactgctgcaatagacgtgtggtcagttggttgc 282
Query: 457 atctttatggagcttatgaatagaaagcctttatttccaggcaaagatcacgttcatcag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atctttatggagcttatgaatagaaagcctttatttccaggcaaagatcacgttcatcag 222
Query: 517 atgcgtattttaacagagcttcttgggacaccaactgaatcagatcttgggtttgtcaag 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgcgtattttaacagagcttcttgggacaccaactgaatcagatcttgggtttgtcaag 162
Query: 577 aatgaggatgccagaagatatattcggcaactcagtccacatcctcgtcagccattagcc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aatgaggatgccagaagatatattcggcaactcagtccacatcctcgtcagccattagcc 102
Query: 637 caaattttccctcatgttcatccattggccattgatcttattgatagaatgttgacattt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 caaattttccctcatgttcatccattggccattgatcttattgatagaatgttgacattt 42
Query: 697 gatcccacaaaaagaattactg 718
||||||||||||||||||||||
Sbjct: 41 gatcccacaaaaagaattactg 20
>KJC_c04172
Length = 648
Score = 668 bits (337), Expect = 0.0
Identities = 351/353 (99%), Gaps = 2/353 (0%)
Strand = Plus / Minus
Query: 64 gttatagccatcagagatgtaattcctcctcctttaagaagagaatttactgatgtctac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gttatagccatcagagatgtaattcctcctcctttaagaagagaatttactgatgtctac 293
Query: 124 attgccatggagctcatggacactgatcttcatcagattatacgctcgaatcaaagtttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 attgccatggagctcatggacactgatcttcatcagattatacgctcgaatcaaagtttg 233
Query: 184 tcagaggagcattgtcagtactttctgtatcagcttcttcgaggattgaagtacatacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcagaggagcattgtcagtactttctgtatcagcttcttcgaggattgaagtacatacac 173
Query: 244 tctgcgaatgttattcatagagatttaaaacccagtaatttgttattaaatgcaaattgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tctgcgaatgttattcatagagatttaaaacccagtaatttgttattaaatgcaaattgt 113
Query: 304 gacttgaagatctgtgatttcggtctagctcggccaacttcagagaatgagtttatgaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gacttgaagatctgtgatttcggtctagctcggccaacttcagagaatgagtttatgaca 53
Query: 364 gaatatgttgtcaccagatggtacagagctcctg-aacttttgctcaactctt 415
||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 52 gaatatgttgtcaccagat-gtacagagctcctgtaacttttgctcaactctt 1
>KJC_c12909
Length = 837
Score = 119 bits (60), Expect = 1e-26
Identities = 304/384 (79%), Gaps = 1/384 (0%)
Strand = Plus / Plus
Query: 133 gagctcatggacactgatcttcatcagattatacgctcgaatcaaagtttgtcagaggag 192
||||| |||||||||||||| || |||||||| || || |||||| || |||||| ||
Sbjct: 354 gagctgatggacactgatctgcaccagattattcgttccaatcaagcattatcagag-ag 412
Query: 193 cattgtcagtactttctgtatcagcttcttcgaggattgaagtacatacactctgcgaat 252
|| || ||||| || |||||||| |||| || |||||||| |||||||| ||||| |||
Sbjct: 413 cactgccagtatttcctgtatcaaattctccgtggattgaaatacatacattctgcaaat 472
Query: 253 gttattcatagagatttaaaacccagtaatttgttattaaatgcaaattgtgacttgaag 312
||| | || |||||||||||||| || ||| | | | |||||||||||||| | |||
Sbjct: 473 gttctgcacagagatttaaaaccaagcaatcttctgctgaatgcaaattgtgatctaaag 532
Query: 313 atctgtgatttcggtctagctcggccaacttcagagaatgagtttatgacagaatatgtt 372
|| |||||||| ||||| ||||| || ||||| | ||| || |||||||||||||||
Sbjct: 533 atatgtgattttggtctggctcgtgtgacctcagaaactgatttcatgacagaatatgtt 592
Query: 373 gtcaccagatggtacagagctcctgaacttttgctcaactcttcagactacactgctgca 432
|| || |||||||| | || || ||||| | | ||||||||||| |||||||| ||
Sbjct: 593 gttacaagatggtatcgtgcaccagaactgctattgaactcttcagattacactgcggct 652
Query: 433 atagacgtgtggtcagttggttgcatctttatggagcttatgaatagaaagcctttattt 492
|| ||||| |||||||| ||||| || || |||||| | ||| || | ||||| |||||
Sbjct: 653 attgacgtatggtcagtgggttgtattttcatggagttgatggatcggaagcccctattt 712
Query: 493 ccaggcaaagatcacgttcatcag 516
|| |||| |||||| || ||||||
Sbjct: 713 cctggcagagatcatgtgcatcag 736
>KJC_c11918
Length = 385
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 139 atggacactgatcttcatcagattatacgctcgaatcaaagtttgtcagaggagcattgt 198
||||| |||||||||||||| || |||||||| || ||| ||| |||| || ||||||
Sbjct: 351 atggatactgatcttcatcaaataatacgctccaaccaaccattgacagatgatcattgt 292
Query: 199 cagtactttctgtatca 215
| ||||||||| |||||
Sbjct: 291 cggtactttctatatca 275