Jatropha Genome Database

JcCB0669741.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0669741.10 - phase: 0 /partial
         (278 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08529                                                            280   2e-75
KJC_c05027                                                            119   4e-27

>KJC_c08529 
          Length = 473

 Score =  280 bits (141), Expect = 2e-75
 Identities = 216/241 (89%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaggacataatcgcaaggtataatctgcattcaaataatatcgacaaacttggccga 60
           |||||||||||||| ||||||||| ||| | | |||||||| ||| | |||  || || |
Sbjct: 342 atgaaggacataattgcaaggtatgatcggtactcaaataacatcaagaaaggtgaccaa 283

                                                                       
Query: 61  ccatctcttgaattgcaacttgaaaatagcaatcacgctcggttgagcaaggaggtggct 120
           |||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||
Sbjct: 282 ccatctcttgaattgcaacttgaaaataacaatcacattcggttgagcaaggagttggct 223

                                                                       
Query: 121 gaaaagactcatcaactcaggcagatgaggggagaggatctgcgaggcctaaatgtggag 180
           ||||||||||||||||| ||||||||||| ||||||||||||| |||  ||||| | |||
Sbjct: 222 gaaaagactcatcaactgaggcagatgagcggagaggatctgcaagggttaaatatagag 163

                                                                       
Query: 181 gaattacagcaattggaaaaaatgcttgaatcaggacttacccgtgtgcttgaaactaag 240
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 162 gaattgcagcaattggaaaaaatgcttgaatcaggacttagccgtgtgcttgaaactaag 103

            
Query: 241 g 241
           |
Sbjct: 102 g 102


>KJC_c05027 
          Length = 429

 Score =  119 bits (60), Expect = 4e-27
 Identities = 74/76 (97%), Gaps = 2/76 (2%)
 Strand = Plus / Minus

                                                                       
Query: 160 ctgcgaggcctaaatgtggaggaattacagcaattggaaaaaat-gcttgaatcaggact 218
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 429 ctgcgaggcctaaatgtggaggaattacagcaattggaaaaaatagcttgaatcagga-t 371

                           
Query: 219 tacccgtgtgcttgaa 234
           ||||||||||||||||
Sbjct: 370 tacccgtgtgcttgaa 355