Jatropha Genome Database

JcCB0652791.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0652791.10 - phase: 1 /partial
         (890 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09861                                                            781   0.0  

>KJC_c09861 
          Length = 622

 Score =  781 bits (394), Expect = 0.0
 Identities = 408/410 (99%), Gaps = 2/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 481 ataagtgcgtgcttgattcttgccgccatcttcaacaggaaggttttgaggtcacttacc 540
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 611 ataagtgcgtgcttgat-cttgc-gccatcttcaacaggaaggttttgaggtcacttacc 554

                                                                       
Query: 541 tacctgtaagaaacgatgggattgtcgatttggaaaaattgcgttctgctattaggcctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tacctgtaagaaacgatgggattgtcgatttggaaaaattgcgttctgctattaggcctg 494

                                                                       
Query: 601 atactggactggtgtcggttatggcggtgaacaatgagattggtgtaattcaaccgatgg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atactggactggtgtcggttatggcggtgaacaatgagattggtgtaattcaaccgatgg 434

                                                                       
Query: 661 aggaaattgggaaaatttgtaaggaatttaatgtgccatttcacaccgatgctgcccaag 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aggaaattgggaaaatttgtaaggaatttaatgtgccatttcacaccgatgctgcccaag 374

                                                                       
Query: 721 cactgggtaagattccaattgatgtggagaaatggaatgttagtttgatgtcattgagtg 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cactgggtaagattccaattgatgtggagaaatggaatgttagtttgatgtcattgagtg 314

                                                                       
Query: 781 gacacaagatatatggtcccaaaggaattggagctttgtatatgcgcaggcgacctagaa 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gacacaagatatatggtcccaaaggaattggagctttgtatatgcgcaggcgacctagaa 254

                                                             
Query: 841 ttagagtggagccccaaatgaatggaggtggacaagagagagggatacga 890
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttagagtggagccccaaatgaatggaggtggacaagagagagggatacga 204