Jatropha Genome Database
- JcCB0646891.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0646891.10 - phase: 0 /partial
(216 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00293 428 e-120
KJC_s18311 236 2e-62
KJC_s19707 198 4e-51
KJC_c08272 123 2e-28
>KJC_c00293
Length = 868
Score = 428 bits (216), Expect = e-120
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 1 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 571
Query: 61 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 511
Query: 121 tttcttgagcgtcgcctgcagacacttgttttcaagtctggtatggctaagtctatccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttcttgagcgtcgcctgcagacacttgttttcaagtctggtatggctaagtctatccac 451
Query: 181 catgctcgagtgcttattaggcagaggcatattagg 216
||||||||||||||||||||||||||||||||||||
Sbjct: 450 catgctcgagtgcttattaggcagaggcatattagg 415
>KJC_s18311
Length = 422
Score = 236 bits (119), Expect = 2e-62
Identities = 125/127 (98%)
Strand = Plus / Plus
Query: 1 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 278
Query: 61 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 279 ggtcttttggatgagagtcaaaaacagcttgattatgtgttggctttgactgtggagaac 338
Query: 121 tttcttg 127
|||||||
Sbjct: 339 tttcttg 345
>KJC_s19707
Length = 449
Score = 198 bits (100), Expect = 4e-51
Identities = 187/216 (86%)
Strand = Plus / Plus
Query: 1 gagaagaacccacgccggatctttgagggtgaggctcttctccgcaggatgaatagatat 60
||||| |||||||| || || ||||||||||| || || || | |||||||||||||||
Sbjct: 231 gagaaaaacccacgtcgtatttttgagggtgaagcactgctgaggaggatgaatagatat 290
Query: 61 ggtcttttggatgagagtcaaaacaagcttgattatgtgttggctttgactgtggagaac 120
|| |||||||||||||| || ||||| || |||||||||||||| |||||||||||||||
Sbjct: 291 ggacttttggatgagagccagaacaaactcgattatgtgttggccttgactgtggagaac 350
Query: 121 tttcttgagcgtcgcctgcagacacttgttttcaagtctggtatggctaagtctatccac 180
||||||||||| || || || || ||||| ||||||||||||||||||||||||||||||
Sbjct: 351 tttcttgagcgccgtcttcaaactcttgtgttcaagtctggtatggctaagtctatccac 410
Query: 181 catgctcgagtgcttattaggcagaggcatattagg 216
|| || ||||||| || ||||| ||||| ||||||
Sbjct: 411 cacgccagagtgctcatcaggcaaaggcacattagg 446
>KJC_c08272
Length = 454
Score = 123 bits (62), Expect = 2e-28
Identities = 108/122 (88%), Gaps = 1/122 (0%)
Strand = Plus / Minus
Query: 96 tgtgttggc-tttgactgtggagaactttcttgagcgtcgcctgcagacacttgttttca 154
||||||||| ||||||||||||||||||||||||||| || || || || ||||| ||||
Sbjct: 410 tgtgttggcctttgactgtggagaactttcttgagcgccgtcttcaaactcttgtgttca 351
Query: 155 agtctggtatggctaagtctatccaccatgctcgagtgcttattaggcagaggcatatta 214
|||||||||||||||||||||||||||| || ||||||| || ||||| ||||| ||||
Sbjct: 350 agtctggtatggctaagtctatccaccacgccagagtgctcatcaggcaaaggcacatta 291
Query: 215 gg 216
||
Sbjct: 290 gg 289