Jatropha Genome Database

JcCB0620091.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0620091.10 - phase: 2 /pseudo/partial
         (1534 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10789                                                             96   3e-19

>KJC_c10789 
          Length = 446

 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                       
Query: 539 tacataattgcagcaaatagacaacttagtgaaatgcatcctatatatagattcttacat 598
           |||||||||||||| ||| | |||||||||| ||||||||| || |||||| || | |||
Sbjct: 233 tacataattgcagccaatcgtcaacttagtgcaatgcatccaatttatagactcatgcat 174

                                                       
Query: 599 ccccatttccgctacacaatggaaatcaatgctcttgctagaga 642
           || |||||||| |||||||||||||| |||||||| ||| ||||
Sbjct: 173 cctcatttccgatacacaatggaaataaatgctctggctcgaga 130