Jatropha Genome Database

JcCB0616641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0616641.10 - phase: 2 /partial
         (583 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12994                                                            900   0.0  

>KJC_c12994 
          Length = 600

 Score =  900 bits (454), Expect = 0.0
 Identities = 475/478 (99%), Gaps = 3/478 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  aaaagattcttctcaatcaagaagcttaaagctgcagttctcaaacagcctctctcttcc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaagattcttctcaatcaagaagcttaaagctgcagttctcaaacagcctctctcttcc 60

                                                                       
Query: 76  agtgttcactggagctcgaattgaaggagaagaatgttctcctgtaaaagtagttttgat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtgttcactggagctcgaattgaaggagaagaatgttctcctgtaaaagtagttttgat 120

                                                                       
Query: 136 tgatattctctctgggaaaattgttaacgctggcccagaatcttttgccaaggtggaaat 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatattctctctgggaaaattgttaacgctggcccagaatcttttgccaaggtggaaat 180

                                                                       
Query: 196 tgtggttcttgagggagattttgatagtgacgagggagacaattggacacatgatgagtt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtggttcttgagggagattttgatagtgacgagggagacaattggacacatgatgagtt 240

                                                                       
Query: 256 taagaacaacatcgtcagagagagagaaggaaagaaaccccttcttacaggagatgtatt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagaacaacatcgtcagagagagagaaggaaagaaaccccttcttacaggagatgtatt 300

                                                                       
Query: 316 tgtgaatttaaatgagggaattggctttatgggtgatatttcatttactgataattcaag 375
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgaatttaaatga-ggaattggctttatgggtgatatttcatttactgataattcaag 359

                                                                       
Query: 376 -ctggacaagaagccgaaggttcaggcttggggcaagagtcgtggataattttgatggaa 434
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tctggacaagaagccgaaggttcaggcttggggcaagagtcgtggataattttgatggaa 419

                                                                     
Query: 435 ctaatgtaagagagg-caaagacggaatccttcattgtcagggatcaccgtggagaac 491
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctaatgtaagagaggtcaaagacggaatccttcattgtcagggatcaccgtggagaac 477