Jatropha Genome Database

JcCB0611681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0611681.10 - phase: 1 /pseudo/partial
         (377 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04735                                                            628   e-180

>KJC_c04735 
          Length = 1528

 Score =  628 bits (317), Expect = e-180
 Identities = 327/329 (99%), Gaps = 1/329 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   agtttgattatctcaagagcttgaaaatagaagagaaaatcaacaaaatcagatggtgcc 108
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1205 agtttgattatctcaagagcttggaaatagaagagaaaatcaacaaaatcagatggtgcc 1146

                                                                        
Query: 109  aaacagccaatggcgctctttttctcctatctactaatgataagaccattaagttttgga 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 aaacagccaatggcgctctttttctcctatctactaatgataagaccattaagttttgga 1086

                                                                        
Query: 169  aggtccaagaaaagaaggttaagaaaatttctgacatgaatgtggacccttcaaaagctc 228
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 aggtccaagaaa-gaaggttaagaaaatttctgacatgaatgtggacccttcaaaagctc 1027

                                                                        
Query: 229  taggaaatggtagtgttgctagttcaagtacttcaagtagtgctaaaccatatattgcaa 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 taggaaatggtagtgttgctagttcaagtacttcaagtagtgctaaaccatatattgcaa 967

                                                                        
Query: 289  atggaggttggccagagaagtcatacagttgtccaagcaatgacttcactttcccacctg 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  atggaggttggccagagaagtcatacagttgtccaagcaatgacttcactttcccacctg 907

                                         
Query: 349  gaggcattccatcactgcgtttacctgtg 377
            |||||||||||||||||||||||||||||
Sbjct: 906  gaggcattccatcactgcgtttacctgtg 878