Jatropha Genome Database

JcCB0590701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0590701.10 - phase: 0 /pseudo
         (313 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00625                                                            161   1e-39
KJC_c00432                                                             80   4e-15

>KJC_c00625 
          Length = 1832

 Score =  161 bits (81), Expect = 1e-39
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                        
Query: 145  cgacgtgaaggactccaggctcagcagcaacagcaacagcaactcacctcgtcattcacc 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 cgacgtgaaggactccaggctcagcagcaacagcaacagcaactcacctcgtcattcacc 1583

                                 
Query: 205  aattccgctaacgataagaag 225
            |||||||||||||||||||||
Sbjct: 1582 aattccgctaacgataagaag 1562



 Score =  137 bits (69), Expect = 2e-32
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgtcgttgaggccaagtgctaggacggaggtgcggaggaataagtacaaggtggcggtg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 atgtcgttgaggccaagtgctaggacggaggtgcggaggaataagtacaaggtggcggtg 1727

                     
Query: 61   gatgccgat 69
            |||||||||
Sbjct: 1726 gatgccgat 1718


>KJC_c00432 
          Length = 1885

 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcgttgaggccaagtgctaggacggaggtgcggaggaataagtacaaggtggcggtg 60
           ||||||||||||||||| |||||||| ||||| || ||||| | ||| ||||||||||||
Sbjct: 125 atgtcgttgaggccaagcgctaggactgaggtacgcaggaacaggtataaggtggcggtg 184

                   
Query: 61  gatgccga 68
           ||||||||
Sbjct: 185 gatgccga 192