Jatropha Genome Database

JcCB0588921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0588921.10 - phase: 0 /pseudo/partial
         (539 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05559                                                            726   0.0  

>KJC_c05559 
          Length = 475

 Score =  726 bits (366), Expect = 0.0
 Identities = 413/424 (97%), Gaps = 11/424 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   atgatgctgta-cagtgaa-agcatgaccaggccaaagccattacccaatgagcatctgc 59
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 57  atgatgctgtaacagtgaatagcatgaccaggccaaagccattacccaatgagcatctg- 115

                                                                       
Query: 60  gctgaccttgctgtgtctacagcaaccaagctacaatgctaccggcatcttggtaaatat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gctgaccttgctgtgtctacagcaaccaagctacaatgctaccggcatcttggtaaatat 175

                                                                       
Query: 120 tttaagcagtctgccaaggctttagaacagcaggttgcaagggaagcgagattttatggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tttaagcagtctgccaaggctttagaacagcaggttgcaagggaagcgagattttatggt 235

                                                                       
Query: 180 gctttaatcagctgatagattgcagcaaaactggaaagttaaacggcagcgcgtggcagc 239
           |||||||||||       ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gctttaatcag-------attgcagcaaaactggaaagttaaacggcagcgcgtggcagc 288

                                                                       
Query: 240 aattgctcctgggaatgaaggattcaccatcgatctttttgacaattcattatacgattc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aattgctcctgggaatgaaggattcaccatcgatctttttgacaattcattatacgattc 348

                                                                       
Query: 300 agcatctctatttcggcccacctctctatctaccattcgcattgaccatgactcagctgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agcatctctatttcggcccacctctctatctaccattcgcattgaccatgactcagctgg 408

                                                                       
Query: 360 catgctagctatagatttacctccaaaatcttgccgttctcttc-attttggttttcttg 418
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 409 catgctagctatagatttacctccaaaatcttgccgttctcttctattttggttttcttg 468

               
Query: 419 gtgt 422
           ||||
Sbjct: 469 gtgt 472