Jatropha Genome Database

JcCB0584071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0584071.10 - phase: 1 /pseudo/partial
         (915 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03906                                                             56   2e-07
KJC_c03168                                                             54   6e-07

>KJC_c03906 
          Length = 556

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 86  caggagggatagtttcatcactcatagggcattttgtgatgccttagcagaagaaactgc 145
           ||||| |||||| ||||| || ||| | |||||||||||||| ||||| ||||||| |||
Sbjct: 216 caggaaggatagcttcataacccatcgagcattttgtgatgcattagctgaagaaagtgc 157

               
Query: 146 aaga 149
           ||||
Sbjct: 156 aaga 153


>KJC_c03168 
          Length = 846

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 87  aggagggatagtttcatcactcatagggcattttgtgatgccttagc 133
           ||||||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct: 275 aggagggatagcttcatcacacatagagccttttgtgatgctttagc 321