Jatropha Genome Database
- JcCB0582061.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0582061.10 + phase: 1 /partial
(620 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00100 1229 0.0
KJC_s19521 208 1e-53
KJC_s21108 100 8e-21
>KJC_c00100
Length = 1444
Score = 1229 bits (620), Expect = 0.0
Identities = 620/620 (100%)
Strand = Plus / Minus
Query: 1 atgaaccatctcagctttccattaatgagaatgcgaatgggttggctaggtatgccatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 atgaaccatctcagctttccattaatgagaatgcgaatgggttggctaggtatgccatca 834
Query: 61 tctgccaggagaatggcttggtaccaattgtggagcctgagattttggttgatggacctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tctgccaggagaatggcttggtaccaattgtggagcctgagattttggttgatggacctc 774
Query: 121 atgacattaagaagtgcgctgatgtaactgagcgggttcttgctgcttgctacaaggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 atgacattaagaagtgcgctgatgtaactgagcgggttcttgctgcttgctacaaggctc 714
Query: 181 tcaatgaccaccatgttttgcttgagggaactcttttgaaacccaacatggtgactccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcaatgaccaccatgttttgcttgagggaactcttttgaaacccaacatggtgactccag 654
Query: 241 gatcagaatccgccaaggttgcaccagaggtgattgctgagtacacggtccgtgccctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gatcagaatccgccaaggttgcaccagaggtgattgctgagtacacggtccgtgccctcc 594
Query: 301 aatgcactgtgcctgccgctgttcctgctgttgtgttcttgtctggtgggcagagtgagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aatgcactgtgcctgccgctgttcctgctgttgtgttcttgtctggtgggcagagtgagg 534
Query: 361 aggaagctaccgtcaacctgaatgcgatgaacaagctcaagaccaagaagccatggtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aggaagctaccgtcaacctgaatgcgatgaacaagctcaagaccaagaagccatggtccc 474
Query: 421 tttccttctcatttggacgtgcacttcaacaaagtaccctcaaggcttgggcaggtaagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tttccttctcatttggacgtgcacttcaacaaagtaccctcaaggcttgggcaggtaagc 414
Query: 481 cagagaatgtgcagaaggctcaagctgcattcctggtcagggctaaggccaactcagagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagagaatgtgcagaaggctcaagctgcattcctggtcagggctaaggccaactcagagg 354
Query: 541 caactcttggaacttaccagggtaatgctactcttggtgagggtgcctcagagagtctcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 caactcttggaacttaccagggtaatgctactcttggtgagggtgcctcagagagtctcc 294
Query: 601 atgtcaaggactacaaatac 620
||||||||||||||||||||
Sbjct: 293 atgtcaaggactacaaatac 274
>KJC_s19521
Length = 344
Score = 208 bits (105), Expect = 1e-53
Identities = 112/113 (99%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 318 gctgttcctgctgttgtgttcttgtctggtgggcagagtgaggaggaagctaccgtcaac 377
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 233 gctgttcctgctgttgtgttcttgtctggtgg-cagagtgaggaggaagctaccgtcaac 291
Query: 378 ctgaatgcgatgaacaagctcaagaccaagaagccatggtccctttccttctc 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctgaatgcgatgaacaagctcaagaccaagaagccatggtccctttccttctc 344
>KJC_s21108
Length = 288
Score = 99.6 bits (50), Expect = 8e-21
Identities = 64/66 (96%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 49 ggtatgccatcatctgccaggagaa-tggcttggtaccaa-ttgtggagcctgagatttt 106
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 223 ggtatgccatcatctgccaggagaagtggcttggtaccaatttgtggagcctgagatttt 282
Query: 107 ggttga 112
||||||
Sbjct: 283 ggttga 288