Jatropha Genome Database

JcCB0581961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0581961.10 - phase: 0 /pseudo/partial
         (772 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08706                                                            728   0.0  
KJC_c02276                                                             50   8e-06

>KJC_c08706 
          Length = 1180

 Score =  728 bits (367), Expect = 0.0
 Identities = 386/390 (98%), Gaps = 3/390 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   caggagagagaactcttggtgtcttgacaaagattgatcttatggataagggtactgatg 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  caggagagagaactcttggtgtcttgacaaagattgatcttatggataagggtactgatg 853

                                                                        
Query: 104  cagttgatatactggaaggaaaagcttatcggctaaagtttccttgggttggtgttgtga 163
            ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 854  cagttgatatactggaaggaaaagcttatcggctaag--ttccttgggttggtgttgtga 911

                                                                        
Query: 164  atcgctcacaagctgatattaacaagaatgttgacatgattgctgccaggcgtagagagc 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  atcgctcacaagctgatattaacaagaatgttgacatgattgctgccaggcgtagagagc 971

                                                                        
Query: 224  gcgagtattttgcaaattccccagagtataagcaccttgctcatagaatgggttctgagc 283
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  gcgagtattt-gcaaattccccagagtataagcaccttgctcatagaatgggttctgagc 1030

                                                                        
Query: 284  atctagcaaagatgctatcaaagcatctggaaactgtaatcaaatccagaattccaggca 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 atctagcaaagatgctatcaaagcatctggaaactgtaatcaaatccagaattccaggca 1090

                                                                        
Query: 344  tccagtcccttatcaacaaaacaattattgaactggaatctgaattgagtcgtctaggaa 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tccagtcccttatcaacaaaacaattattgaactggaatctgaattgagtcgtctaggaa 1150

                                          
Query: 404  agcctattgctgctgatgctgggggaaagt 433
            ||||||||||||||||||||||||||||||
Sbjct: 1151 agcctattgctgctgatgctgggggaaagt 1180


>KJC_c02276 
          Length = 1129

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 144 tccttgggttggtgttgtgaatcgctcacaagctgatattaacaagaatgttgacatgat 203
           ||||||||||||  |||| || |||||||| || ||||||||||| ||||| || |||||
Sbjct: 853 tccttgggttgggattgttaaccgctcacaggcagatattaacaaaaatgtagatatgat 912

            
Query: 204 t 204
           |
Sbjct: 913 t 913