Jatropha Genome Database

JcCB0580691.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0580691.10 - phase: 2 /pseudo/partial
         (1156 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01752                                                            133   1e-30
KJC_c04248                                                             82   3e-15
KJC_c03305                                                             56   2e-07

>KJC_c01752 
          Length = 1131

 Score =  133 bits (67), Expect = 1e-30
 Identities = 81/83 (97%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1075 aattgtggtgcggatggtcactggagacaacataacaactgacaaaggccatcgctagag 1134
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1131 aattgtggtgcggatggtcactggagacaacataacaactg-caaaggccatcgctagag 1073

                                   
Query: 1135 aatgtggaa-tttgactgataag 1156
            ||||||||| |||||||||||||
Sbjct: 1072 aatgtggaattttgactgataag 1050


>KJC_c04248 
          Length = 613

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                   
Query: 1  gcttgtgactactgttggaatgagaacacagtggggtaaac 41
          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gcttgtgactactgttggaatgagaacacagtggggtaaac 1


>KJC_c03305 
          Length = 682

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 372 ctgcttgtgagaccatggggtctgccacaactatctgcagtgacaaaactgg 423
           |||| ||||| |||||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 330 ctgcctgtgaaaccatgggttctgctacaactatttgcagtgacaagactgg 279