Jatropha Genome Database

JcCB0580221.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0580221.10 + phase: 0 
         (600 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11301                                                            973   0.0  

>KJC_c11301 
          Length = 671

 Score =  973 bits (491), Expect = 0.0
 Identities = 518/523 (99%), Gaps = 3/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggattataaagatggagattttga-tgttgatctagaaaatgggcttagagttaacgc 59
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 atggattataaagatggagattttgaatgttgatctagaaaatgggcttagagttaacgc 474

                                                                       
Query: 60  tgaagacccacacaaagactacatttctgttgtaaaaattcaagcaaaggagttgcttgg 119
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgaagacc-acacaaagactacatttctgttgtaaaaattcaagcaaaggagttgcttgg 415

                                                                       
Query: 120 taagatttatggagtctttgttgatggtacaataaatgacgaggagggattgaatttgtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taagatttatggagtctttgttgatggtacaataaatgacgaggagggattgaatttgtg 355

                                                                       
Query: 180 tcataatgcaccaagttcgaatggagtttccgtggaacaagtgaagttggaaggtgagaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcataatgcaccaagttcgaatggagtttccgtggaacaagtgaagttggaaggtgagaa 295

                                                                       
Query: 240 gactgttgatcatgctgagaagaaagtggtaaaagagaagcgtaaaaa-gatgagcaaca 298
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 294 gactgttgatcatgctgagaagaaagtggtaaaagagaagcgtaaaaaagatgagcaaca 235

                                                                       
Query: 299 aaaaagcttccaagcctcctaggccaccaacaggtccaacgttggatgctgctgaccaga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aaaaagcttccaagcctcctaggccaccaacaggtccaacgttggatgctgctgaccaga 175

                                                                       
Query: 359 agctcatcaaggagcttactgaactggccatgttgaagcgtgcaaaggtcgagcgaatga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 agctcatcaaggagcttactgaactggccatgttgaagcgtgcaaaggtcgagcgaatga 115

                                                                       
Query: 419 aagccttgaagaaaatgaaagcagcaaaggcctcatcatctaatagcaatacgattgcta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 aagccttgaagaaaatgaaagcagcaaaggcctcatcatctaatagcaatacgattgcta 55

                                                      
Query: 479 tggtgttcaccgttctcttttgtcttgtaattgtatttcaagg 521
           ||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 54  tggtgttcaccgttcttctttgtcttgtaattgtatttcaagg 12