Jatropha Genome Database

JcCB0580021.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0580021.20 - phase: 1 /partial
         (203 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00626                                                             54   1e-07

>KJC_c00626 
          Length = 2027

 Score = 54.0 bits (27), Expect = 1e-07
 Identities = 159/203 (78%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgttttgattatatccttacccagcaagcttttgtagctgtggacaatggtgctcctg 60
           ||||||||||||| |||||||||||||| || || || ||||||||    ||   |||| 
Sbjct: 451 ctcgttttgattacatccttacccagcaggccttcgtcgctgtggatgcaggcagtcctc 392

                                                                       
Query: 61  taaatcgtgatctcatcagcaacttcctatcagacccagtgcatggagccattgaggttt 120
           | || | ||| || || ||||||||| | |||||||| || ||||| || ||||| || |
Sbjct: 391 tcaaccatgaccttataagcaacttcatgtcagaccccgttcatggggctattgaagtgt 332

                                                                       
Query: 121 gtgcccaattaagacctactttggacatttcagtgccaccggatgccgactttgtgagac 180
           |||||   || ||||| ||| | |||||||||||||| || ||||| || |||||  | |
Sbjct: 331 gtgccaggttgagaccaactgttgacatttcagtgcctccagatgcagattttgttcgcc 272

                                  
Query: 181 cagagttgcgccaatctagcaat 203
           |||| |||||||| ||| |||||
Sbjct: 271 cagaattgcgccagtctggcaat 249