Jatropha Genome Database

JcCB0575581.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0575581.10 + phase: 1 /partial
         (782 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00100                                                             54   5e-07

>KJC_c00100 
          Length = 1444

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 468 ttggctcgttatgcaataatctgtcaggaaaatgggttagtgcctatcgtagagcctgaa 527
           |||||| | ||||| || ||||| ||||| ||||| || || || || || |||||||| 
Sbjct: 852 ttggctaggtatgccatcatctgccaggagaatggcttggtaccaattgtggagcctgag 793

                                                              
Query: 528 gttttgactgatggacctcacgacattaagaaatgtgctgctgtgactgag 578
            |||||  |||||||||||| ||||||||||| || |||| ||| ||||||
Sbjct: 792 attttggttgatggacctcatgacattaagaagtgcgctgatgtaactgag 742



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 381 ggtgcccgattcgccaaatggcgtgctgtacttaa 415
           ||||||||||| ||||||||||||||||| |||||
Sbjct: 939 ggtgcccgatttgccaaatggcgtgctgtgcttaa 905