Jatropha Genome Database

JcCB0574741.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0574741.10 + phase: 2 /partial
         (781 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11341                                                            125   2e-28
KJC_c07653                                                             58   3e-08

>KJC_c11341 
          Length = 701

 Score =  125 bits (63), Expect = 2e-28
 Identities = 141/167 (84%)
 Strand = Plus / Minus

                                                                       
Query: 511 agtcttttcccacaataactatgttacatgtgttcagtttaatcccatggatgatgattc 570
           ||||||||| |||| ||| ||||| || |||||||||||||||||  ||||  |  ||| 
Sbjct: 349 agtcttttcacacagtaattatgtaacctgtgttcagtttaatcctgtggacaacaatta 290

                                                                       
Query: 571 attcatcagcggttccatagatgggaaagttcgcatctggacaattcctggttgtcaagt 630
            |||||||| |||||||||||||| ||||||||||||||| |||||||| |||| |||||
Sbjct: 289 tttcatcagtggttccatagatggaaaagttcgcatctgggcaattcctagttgccaagt 230

                                                          
Query: 631 tattgactggattgatataaccgaaattgttactgcagtttgttatc 677
           | | || |||| ||||||||  ||||| ||||||||||| |||||||
Sbjct: 229 tgtggattggagtgatataaaggaaatagttactgcagtatgttatc 183


>KJC_c07653 
          Length = 516

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 36/37 (97%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                               
Query: 1  ggctagggctc-aaatggttcgagttcgttcatataa 36
          ||||||||||| |||||||||||||||||||||||||
Sbjct: 37 ggctagggctcgaaatggttcgagttcgttcatataa 1