Jatropha Genome Database

JcCB0574131.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0574131.10 - phase: 2 /partial
         (397 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04512                                                            684   0.0  

>KJC_c04512 
          Length = 614

 Score =  684 bits (345), Expect = 0.0
 Identities = 352/353 (99%), Gaps = 1/353 (0%)
 Strand = Plus / Minus

                                                                       
Query: 28  atatcgtgtctgtg-attttgggacatttaagcgctctgttgcatttcacttagaggatg 86
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atatcgtgtctgtgtattttgggacatttaagcgctctgttgcatttcacttagaggatg 555

                                                                       
Query: 87  ctgttgaactgagttcaaatacagtgttcaatccagtaaaagttagtagccaagcagtct 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctgttgaactgagttcaaatacagtgttcaatccagtaaaagttagtagccaagcagtct 495

                                                                       
Query: 147 cttctgatcccctccatattggccctttcaataagtcaaatacttcttttaatatcaatc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cttctgatcccctccatattggccctttcaataagtcaaatacttcttttaatatcaatc 435

                                                                       
Query: 207 catctgctgctcaagtggaatctcagagattgtcattagaaaagaatcaacaattgaacc 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 catctgctgctcaagtggaatctcagagattgtcattagaaaagaatcaacaattgaacc 375

                                                                       
Query: 267 tggtttctatatctggtggtaatacagagaactggggagagtccaacatggctgatgcca 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tggtttctatatctggtggtaatacagagaactggggagagtccaacatggctgatgcca 315

                                                                
Query: 327 gtcctaggactgatatctcaacagatgccgatactgatgataaaaatcagagg 379
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtcctaggactgatatctcaacagatgccgatactgatgataaaaatcagagg 262