Jatropha Genome Database

JcCB0568861.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0568861.10 - phase: 1 /pseudo/partial
         (565 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04285                                                            422   e-118

>KJC_c04285 
          Length = 1040

 Score =  422 bits (213), Expect = e-118
 Identities = 235/240 (97%), Gaps = 3/240 (1%)
 Strand = Plus / Plus

                                                                       
Query: 326 caacgctctgcaacaaaggtcacattcccccttgtgtggacaaacacttgctgcagtcat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caacgctctgcaacaaaggtcacattcccccttgtgtggacaaacacttgctgcagtcat 382

                                                                       
Query: 386 cctttgtaccgtgattctgagcttatcgaagagaatgctcttggtgtgaggaatgctgca 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctttgtaccgtgattctgagcttatcgaagagaatgctcttggtgtgaggaatgctgca 442

                                                                       
Query: 446 caaaggaagcttttggatgagcttggtatccctgctgaagatgttccagttgatcagttt 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caaaggaagcttttggatgagcttggtatccctgctgaagatgttccagttgatcagttt 502

                                                                       
Query: 506 acctcattggggcgtatactatacaaggcacttactaggatggaagtggggagagcatga 565
           ||||||||||||||||||||||||||||||| | ||  ||||||||| ||||||||||||
Sbjct: 503 acctcattggggcgtatactatacaaggcaccttct--gatggaagt-gggagagcatga 559