Jatropha Genome Database
- JcCB0568851.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0568851.10 - phase: 0 /partial
(1026 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c03021 902 0.0
KJC_c00319 418 e-116
KJC_s18387 194 3e-49
KJC_c01498 54 7e-07
KJC_c03020 52 3e-06
>KJC_c03021
Length = 1036
Score = 902 bits (455), Expect = 0.0
Identities = 478/482 (99%), Gaps = 4/482 (0%)
Strand = Plus / Minus
Query: 549 gggatctcctgg-aaggat--gtcaccaagaagtgtag-agcctatctctccaatgggct 604
|||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1036 gggatctcctgggaaggatacgtcaccaagaagtgtaggagcctatctctccaatgggct 977
Query: 605 ctcgtctctctgcatttgtccagcgggagaagcagcaccaacaacttcggagccttagtt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ctcgtctctctgcatttgtccagcgggagaagcagcaccaacaacttcggagccttagtt 917
Query: 665 caagggatctcggatcaaacaatcctgcagcctccattgttgagtctccagtgaattctt 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 caagggatctcggatcaaacaatcctgcagcctccattgttgagtctccagtgaattctt 857
Query: 725 ggactaagtggggctcaccaaatgggaagttagattggtccattaatggcggagatgaac 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ggactaagtggggctcaccaaatgggaagttagattggtccattaatggcggagatgaac 797
Query: 785 taggccacttacgaaggtcatcatcatttgagcttggtaacaatggggaggagccagacc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 taggccacttacgaaggtcatcatcatttgagcttggtaacaatggggaggagccagacc 737
Query: 845 tgtcatgggtccaatctctggttaaagaatcacctcctgagatgttgaaagagaagtttg 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgtcatgggtccaatctctggttaaagaatcacctcctgagatgttgaaagagaagtttg 677
Query: 905 gtgtaccagtttctggtgcagcatcatccggtgagggattaaatcctagttctcaaattg 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtgtaccagtttctggtgcagcatcatccggtgagggattaaatcctagttctcaaattg 617
Query: 965 attctgttttggaatcttggctcgagcagatgcagattgatcagcagcaacagcttgtag 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 attctgttttggaatcttggctcgagcagatgcagattgatcagcagcaacagcttgtag 557
Query: 1025 tc 1026
||
Sbjct: 556 tc 555
>KJC_c00319
Length = 473
Score = 418 bits (211), Expect = e-116
Identities = 214/215 (99%)
Strand = Plus / Minus
Query: 1 gacatggctgctgctttgagcctattgcctggttcgccatcgtcagtctctgccatgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gacatggctgctgctttgagcctattgcctggttcgccatcgtcagtctctgccatgtct 156
Query: 61 cctagtccatttaatcaaccaatgtctcctacagcgagcagcatttcccactcatctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cctagtccatttaatcaaccaatgtctcctacagcgagcagcatttcccactcatctctt 96
Query: 121 gcatggccacagccaaacgtaccgacactccatcttccagcaagcaatcttcaatcaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gcatggccacagccaaacgtaccgacactccatcttccagcaagcaatcttcaatcaagt 36
Query: 181 cgcttgagatcgtcacttagtgcccgcgatatccc 215
||||||||||||||||||||||||| |||||||||
Sbjct: 35 cgcttgagatcgtcacttagtgcccccgatatccc 1
>KJC_s18387
Length = 328
Score = 194 bits (98), Expect = 3e-49
Identities = 146/155 (94%), Gaps = 9/155 (5%)
Strand = Plus / Minus
Query: 1 gacatggctgctgctttgagcctattgcctggttcgccatcgtcagtctctgccatgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gacatggctgctgctttgagcctattgcctggttcgccatcgtcagtctctgccatgtct 96
Query: 61 cctagtcca-tttaatcaaccaatgtctcctaca-gcga-gcagca--tttcccac--tc 113
||||||||| |||||||||||||||||||||||| |||| |||||| |||||||| ||
Sbjct: 95 cctagtccattttaatcaaccaatgtctcctacacgcgacgcagcacttttcccacgttc 36
Query: 114 atc--tcttgcatggccacagccaaacgtaccgac 146
||| ||||||||||||||||||||||||||||||
Sbjct: 35 atccttcttgcatggccacagccaaacgtaccgac 1
>KJC_c01498
Length = 788
Score = 54.0 bits (27), Expect = 7e-07
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Minus
Query: 442 gttctcaatcaattccagcagcagcagagcatgttatctccaatcaatacaagtgttttc 501
||||||||||| |||||||||||| ||||||||||| | ||||| |||| | |||||
Sbjct: 743 gttctcaatcagttccagcagcagagcagcatgttatcactgatcaacacaaattttttc 684
Query: 502 tccccaaaaaatgttgatcaccctct 527
| || || |||||||||||||||||
Sbjct: 683 t--cctaagaatgttgatcaccctct 660
>KJC_c03020
Length = 760
Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 151 catcttccagcaagcaatcttcaatcaagtcgcttgagatcgtcacttagtgcc 204
||||| |||| |||||||||||| || |||||||||||||| || |||| ||||
Sbjct: 554 catctcccaggaagcaatcttcagtccagtcgcttgagatcttcccttaatgcc 607