Jatropha Genome Database

JcCB0551851.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0551851.10 - phase: 0 /partial
         (319 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02339                                                            188   5e-48

>KJC_c02339 
          Length = 1002

 Score =  188 bits (95), Expect = 5e-48
 Identities = 233/279 (83%)
 Strand = Plus / Minus

                                                                       
Query: 41  tggtttttgctgttaatggacagaggtttgagctatcaagtattgacccttctactactc 100
           |||||||||||||||||||| |||| |||||||| || ||| |||| |||||||| ||| 
Sbjct: 882 tggtttttgctgttaatggaaagagatttgagctttctagtgttgatccttctacgactt 823

                                                                       
Query: 101 tgcttgaattcttgcgttccgatacttctttcaagagtgtcaagctcagttgtggtgaag 160
           ||||||||||| ||||| |  | |||  |||||| || ||||||||| |||| |||||||
Sbjct: 822 tgcttgaattcctgcgtacacagactagtttcaaaagcgtcaagctcggttgcggtgaag 763

                                                                       
Query: 161 gtggttgtggtgcttgtattgttttggtctcaaagtatgatccagtgcttgaccaagttg 220
           ||||||||||||||||| | |||||| |||| |||||  |||||||||||||||||||||
Sbjct: 762 gtggttgtggtgcttgtgtcgttttgctctccaagtacaatccagtgcttgaccaagttg 703

                                                                       
Query: 221 aggattttacagtaagctcgtgtctgacacttctttgcagtataaatggatgttcaatta 280
           ||||| |||| || ||||| ||||| || || || ||||| |||||| ||   ||||| |
Sbjct: 702 aggatcttacggtgagctcatgtcttacgctcctctgcagcataaatagagcctcaatca 643

                                                  
Query: 281 ccactactgaaggcctggggaatagcaaagatggattcc 319
           | || | ||||||||| || ||||| |||||||| ||||
Sbjct: 642 caacaagtgaaggccttggtaatagtaaagatggtttcc 604