Jatropha Genome Database

JcCB0551591.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0551591.10 - phase: 0 
         (387 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11943                                                            581   e-166

>KJC_c11943 
          Length = 382

 Score =  581 bits (293), Expect = e-166
 Identities = 302/304 (99%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 21  gcaacaacctattcctcagcacttgatgacaagcagtagcgaggatctctttgacttcat 80
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaacaacctattcctcagnacttgatgacaagcagtagcgaggatctctttgacttcat 323

                                                                       
Query: 81  tgcttcaacattaaagcagttcgttgaaaaagaagaaagtgg-ttccgagtttgcttcag 139
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 322 tgcttcaacattaaagcagttcgttgaaaaagaagaaagtgggttccgagtttgcttcag 263

                                                                       
Query: 140 ttagaacaagggaacttggatttacattctcctttcctgtaaaacaaacgtctattcgta 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttagaacaagggaacttggatttacattctcctttcctgtaaaacaaacgtctattcgta 203

                                                                       
Query: 200 cagggaacctcatcaaatggacaaaaggatttgctatcgaggacatggttggaagagatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cagggaacctcatcaaatggacaaaaggatttgctatcgaggacatggttggaagagatg 143

                                                                       
Query: 260 ttcttgaatgtttacaagcgggattgaccaggaatggtctagatatgcaggtcgtcttgt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttcttgaatgtttacaagcgggattgaccaggaatggtctagatatgcaggtcgtcttgt 83

               
Query: 320 tggt 323
           ||||
Sbjct: 82  tggt 79