Jatropha Genome Database

JcCB0550651.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0550651.10 - phase: 0 /partial
         (273 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01322                                                            541   e-154
KJC_s19338                                                            264   1e-70

>KJC_c01322 
          Length = 1555

 Score =  541 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgcctccaactttgagatttgtaatggatggtgaaatgcctgattatttgcttgcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gtgcctccaactttgagatttgtaatggatggtgaaatgcctgattatttgcttgcaaag 705

                                                                       
Query: 61  gatttgattttacagattattggtgaaatatctgtagctggtgcaacatataaatcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gatttgattttacagattattggtgaaatatctgtagctggtgcaacatataaatcaatg 645

                                                                       
Query: 121 gagtttgtcggcacaactgttgagagtttaaatatggaagagcggatgacattgtgtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gagtttgtcggcacaactgttgagagtttaaatatggaagagcggatgacattgtgtaac 585

                                                                       
Query: 181 atggttgttgaagctggggggaagaatggggttgtccctgctgatagcactacattcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atggttgttgaagctggggggaagaatggggttgtccctgctgatagcactacattcaag 525

                                            
Query: 241 taccttgaggataagacatctgtgccctatcaa 273
           |||||||||||||||||||||||||||||||||
Sbjct: 524 taccttgaggataagacatctgtgccctatcaa 492


>KJC_s19338 
          Length = 425

 Score =  264 bits (133), Expect = 1e-70
 Identities = 182/204 (89%), Gaps = 22/204 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgcctccaactttgagatttgtaatggatggtgaaatgcctgattatttgcttgcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtgcctccaactttgagatttgtaatggatggtgaaatgcctgattatttgcttgcaaag 123

                                                                       
Query: 61  gatttgattttacagattattggtgaaatatctgtagctggtgcaacatataaatcaatg 120
           ||||||||||||||                      ||||||||||||||||||||||||
Sbjct: 122 gatttgattttaca----------------------gctggtgcaacatataaatcaatg 85

                                                                       
Query: 121 gagtttgtcggcacaactgttgagagtttaaatatggaagagcggatgacattgtgtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  gagtttgtcggcacaactgttgagagtttaaatatggaagagcggatgacattgtgtaac 25

                                   
Query: 181 atggttgttgaagctggggggaag 204
           ||||||||||||||||||||||||
Sbjct: 24  atggttgttgaagctggggggaag 1