Jatropha Genome Database

JcCB0550571.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0550571.10 + phase: 1 /pseudo/partial
         (842 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10277                                                            484   e-136

>KJC_c10277 
          Length = 673

 Score =  484 bits (244), Expect = e-136
 Identities = 253/255 (99%), Gaps = 1/255 (0%)
 Strand = Plus / Plus

                                                                       
Query: 83  ggaacttttactcactgaaaaaaggcgagttgacacttgtagacatctgtttgctgtttt 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggaacttttactcactgaaaaaaggcgagttgacacttgtagacatctgtttgctgtttt 479

                                                                       
Query: 143 caaagagtattgtatcagttgtgaacttcaattggcagggcctgaatatgaaagtctcca 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caaagagtattgtatcagttgtgaacttcaattggcagggcctgaatatgaaagtctcca 539

                                                                       
Query: 203 gaatttctcttccctcccattgacaattgcagaggaattgtttagctcctgtacccaagc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaatttctcttccctcccattgacaattgcagaggaattgtttagctcctgtacccaagc 599

                                                                       
Query: 263 aattttaatggatacatcatcatcgaagaaggccagtgttacagtagataatcatttgag 322
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 600 aattttaatggatacatcatcatcgaagaaggccagtnttacagtagat-atcatttgag 658

                          
Query: 323 cccagctcacacatt 337
           |||||||||||||||
Sbjct: 659 cccagctcacacatt 673