Jatropha Genome Database
- JcCB0550111.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0550111.10 + phase: 0 /partial
(1435 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c03846 121 5e-27
KJC_c02082 98 7e-20
KJC_s13546 90 2e-17
>KJC_c03846
Length = 771
Score = 121 bits (61), Expect = 5e-27
Identities = 205/253 (81%)
Strand = Plus / Minus
Query: 1037 tttttatgagtattatctggttctacattgtagctaatgaactcgtcgctttgctcgtgg 1096
|||| ||||||||| | ||||||||||| |||||||||| || || |||||| | ||||
Sbjct: 521 ttttcatgagtattgtgtggttctacatgatagctaatgagcttgttgctttgttggtgg 462
Query: 1097 catatggtgtaatatttggaattaatccatcactccttggattaactgtgttggcatggg 1156
||| ||| | | || || ||||| |||||| |||||||||| ||||| || |||||||
Sbjct: 461 catttggcttggttttggggattaacccatcaatccttggattgactgtattagcatggg 402
Query: 1157 gaaactcaatgggtgatctgatgtcaaatgttgcattagcaacgaatggtggggacagct 1216
| ||||||||||||||| | ||||||||||||| | |||| ||||||| | |||||
Sbjct: 401 gcaactcaatgggtgatttagtgtcaaatgttgctctggcaatgaatggtagtgacagtg 342
Query: 1217 tgcaaattgcaatgtctgggtgctatgcggggcccatgttcaacacacttgttggattgg 1276
|||||| || | ||||| || ||||| || ||||||||||| ||||||||||| ||||
Sbjct: 341 cgcaaatcgccttttctggatgttatgcaggtcccatgttcaatacacttgttggcttgg 282
Query: 1277 gactctcaatgct 1289
| ||||||||||
Sbjct: 281 gtatctcaatgct 269
>KJC_c02082
Length = 1554
Score = 97.6 bits (49), Expect = 7e-20
Identities = 175/217 (80%)
Strand = Plus / Plus
Query: 34 ttggggaatactgctgccgattacttttgttgttctttggagaagttatcaaatttgctg 93
|||||||||||||| ||||| |||||||| ||||| ||||||||||| || | | ||
Sbjct: 763 ttggggaatactgcagccgactacttttgctgttcattggagaagttgtcctgtcttttg 822
Query: 94 aaattgccaccagctgtcgctggtgttactttgctgccattgggaaatggggcccctgat 153
||||| || ||| |||| ||||||||| | | || ||| | || ||||| ||||| |||
Sbjct: 823 aaattacctccaactgtggctggtgttgccctccttccacttgggaatggagccccagat 882
Query: 154 gtgtttgctagcattgctgcttttgttggcaagaatgctggtgcagtgggtctcaatagt 213
|||||||| || |||||||| |||||||||||| |||| || | ||||| || ||||||
Sbjct: 883 gtgtttgcaagtattgctgcctttgttggcaaggatgcaggagatgtgggccttaatagt 942
Query: 214 gtcttagggggagctgtttttattacttgtattgttg 250
|| || || || || || ||| |||||||||||||||
Sbjct: 943 gtgttgggtggtgcagtgtttgttacttgtattgttg 979
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 619 tggatgtgggcctcaaatgtggcaatttattc 650
|||||||||||||||||||||||||| |||||
Sbjct: 1351 tggatgtgggcctcaaatgtggcaatatattc 1382
>KJC_s13546
Length = 255
Score = 89.7 bits (45), Expect = 2e-17
Identities = 138/169 (81%)
Strand = Plus / Plus
Query: 23 tgttttatcttttggggaatactgctgccgattacttttgttgttctttggagaagttat 82
|||||||| | |||||||||||||| ||||| |||||||| ||||| ||||||||||| |
Sbjct: 75 tgttttatttgttggggaatactgcagccgactacttttgctgttcattggagaagttgt 134
Query: 83 caaatttgctgaaattgccaccagctgtcgctggtgttactttgctgccattgggaaatg 142
| | | ||||||| || ||| |||| ||||||||| | | || ||| | || ||||
Sbjct: 135 cctgtcttttgaaattacctccaactgtggctggtgttgccctccttccacttgggaatg 194
Query: 143 gggcccctgatgtgtttgctagcattgctgcttttgttggcaagaatgc 191
| ||||| ||||||||||| || |||||||| |||||||||||| ||||
Sbjct: 195 gagccccagatgtgtttgcaagtattgctgcctttgttggcaaggatgc 243