Jatropha Genome Database

JcCB0549911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0549911.10 - phase: 0 
         (420 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10052                                                            402   e-112

>KJC_c10052 
          Length = 342

 Score =  402 bits (203), Expect = e-112
 Identities = 210/211 (99%), Gaps = 1/211 (0%)
 Strand = Plus / Minus

                                                                       
Query: 202 ggcagtcaccagtacccacctacaataaaatatctgcatttgcacgagtgtgaccgattc 261
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 340 ggcagtcaccagtacccacctaca-taaaatatctgcatttgcacgagtgtgaccgattc 282

                                                                       
Query: 262 tctatagggatcttctgtatgccaccatcctctattataccgcttcataatcatcctggg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tctatagggatcttctgtatgccaccatcctctattataccgcttcataatcatcctggg 222

                                                                       
Query: 322 atgactgtattgagcaagcttctttatggttcattacttgtaaagtcatacgattggctt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgactgtattgagcaagcttctttatggttcattacttgtaaagtcatacgattggctt 162

                                          
Query: 382 gatctccctgggtttgatgatccctctcaag 412
           |||||||||||||||||||||||||||||||
Sbjct: 161 gatctccctgggtttgatgatccctctcaag 131