Jatropha Genome Database

JcCB0549071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0549071.10 + phase: 2 /partial
         (559 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02901                                                            398   e-111

>KJC_c02901 
          Length = 523

 Score =  398 bits (201), Expect = e-111
 Identities = 229/233 (98%), Gaps = 4/233 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttagaatgaaagtaagagaatgtatggaaaaggaagtagctcctataatggcagagta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 294 tgttagaatgaaagtaagagaatgtatggaaaagga-gtagctcctataatggcagagta 352

                                                                       
Query: 61  ctgggagaaggcaagttttccctttcatgttattcccaagcttggttccctgcgcattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctgggagaaggcaagttttccctttcatgttattcccaagcttggttccctgcgcattgc 412

                                                                       
Query: 121 tggtggcacaatcaagggttacggttgtcctggtatgtcgctcgctggaagtgctattgc 180
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggt-gcacaatcaagggttac-gttgtcctggtatgtcgctcgctggaagtgctattgc 470

                                                                
Query: 181 tacagcagaagttgctagagttgatgcgagctgttctaccttc-attttggtg 232
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 471 tacagcagaagttgctagagttgatgcgagctgttctaccttctattttggtg 523