Jatropha Genome Database

JcCB0545081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0545081.10 + phase: 0 
         (684 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07497                                                            957   0.0  

>KJC_c07497 
          Length = 586

 Score =  957 bits (483), Expect = 0.0
 Identities = 497/499 (99%), Gaps = 2/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 170 gttctagttccgggtctagctccatacccgaataccaagctccttatcctgaccaggttc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gttctagttccgggtctagctccatacccgaataccaagctccttatcctgaccaggttc 527

                                                                       
Query: 230 ttgaaaatgtcctcgagaatgttctctgcttcttgacctcacgccgggacagaaacgctg 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttgaaaatgtcctcgagaatgttctctgcttcttgacctcacgccgggacagaaacgctg 467

                                                                       
Query: 290 cctcattggtctgtaggtcttggtatcgtgtggaggcgcttacacgatccgagctcttca 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cctcattggtctgtaggtcttggtatcgtgtggaggcgcttacacgatccgagctcttca 407

                                                                       
Query: 350 tcgggaattgttatgcagtctctccacaacgcgctacggcgcggtttgctcgaatccggt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcgggaattgttatgcagtctctccacaacgcgctacggcgcggtttgctcgaatccggt 347

                                                                       
Query: 410 ccctgacattgaagggcaagccccggttcgctgatttcaaccttatgcctcctcgatggg 469
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccctgacattgaagggcaag-cccggttcgctgatttcaaccttatgcctcctcgatggg 288

                                                                       
Query: 470 gggctcactttgcgccatgggtttcttctatggcaaaggcatacccttggctcgagaagg 529
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gggctcactttgcgccatggg-ttcttctatggcaaaggcatacccttggctcgagaagg 229

                                                                       
Query: 530 ttcacttgaagcggatgaccgtgacggatgatgatcttgcgctgcttgcggagtcatttt 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttcacttgaagcggatgaccgtgacggatgatgatcttgcgctgcttgcggagtcatttt 169

                                                                       
Query: 590 tgggatttaaggagcttgtgctagtgtgttgtgatgggtttggcactagtgggcttgctg 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tgggatttaaggagcttgtgctagtgtgttgtgatgggtttggcactagtgggcttgctg 109

                              
Query: 650 tggttgctagtagatgcag 668
           |||||||||||||||||||
Sbjct: 108 tggttgctagtagatgcag 90