Jatropha Genome Database

JcCB0543221.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0543221.10 - phase: 2 /partial
         (449 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00635                                                            864   0.0  

>KJC_c00635 
          Length = 1036

 Score =  864 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggattgaaaaccttctctctccccgatcttgctaacgactattcagctcttgagcccgt 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 921 aggattgaaaaccttctctctccccgatcttgcctacgactattcagctcttgagcccgt 862

                                                                       
Query: 61  gattagtgccgagataatgcagcttcatcaccaaaagcaccaccagacttatattactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gattagtgccgagataatgcagcttcatcaccaaaagcaccaccagacttatattactaa 802

                                                                       
Query: 121 ctataataagtctcttgagctgctcaatgaagctatgaataagggggactctgcttctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctataataagtctcttgagctgctcaatgaagctatgaataagggggactctgcttctgt 742

                                                                       
Query: 181 tgtcaagttgcagagcgccatcaagttcaatggtggaggtcatatcaaccactccatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcaagttgcagagcgccatcaagttcaatggtggaggtcatatcaaccactccatttt 682

                                                                       
Query: 241 ctggaagaatctcgcccctgttcgtgaaggaggtggtgaacctccgcatggttcccttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggaagaatctcgcccctgttcgtgaaggaggtggtgaacctccgcatggttcccttgg 622

                                                                       
Query: 301 ttgggcgattgatgaagattttggttctttggaaaagttgatccagaaaatcagcacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgggcgattgatgaagattttggttctttggaaaagttgatccagaaaatcagcacaga 562

                                                                       
Query: 361 aggtgctgctgtccaaggatctggatgggtgtggcttggtttggacaaagaagcaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgctgctgtccaaggatctggatgggtgtggcttggtttggacaaagaagcaaagaa 502

                                   
Query: 421 acttgtagttgagacaactgcaaa 444
           ||||||||||||||||||||||||
Sbjct: 501 acttgtagttgagacaactgcaaa 478