Jatropha Genome Database

JcCB0539871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0539871.10 + phase: 0 /pseudo
         (453 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00522                                                            884   0.0  

>KJC_c00522 
          Length = 1183

 Score =  884 bits (446), Expect = 0.0
 Identities = 453/454 (99%), Gaps = 1/454 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtttcaaggtcgtatatgaattttctagacttggcctctgggaacttgttggatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atggtttcaaggtcgtatatgaattttctagacttggcctctgggaacttgttggatatt 255

                                                                       
Query: 61  cctcagactccaaggtctcttcctagagtgatgactgttcctggaattatctctgatgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cctcagactccaaggtctcttcctagagtgatgactgttcctggaattatctctgatgcg 315

                                                                       
Query: 121 gatggttatggctgtaatgatggtgattcagaagttagttcatctatttgtgagcggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatggttatggctgtaatgatggtgattcagaagttagttcatctatttgtgagcggaaa 375

                                                                       
Query: 181 attatagtggcaaatatgttacctttgcatgctaagaaggatacaaatggcaaatggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 attatagtggcaaatatgttacctttgcatgctaagaaggatacaaatggcaaatggtgc 435

                                                                       
Query: 241 ttcagccgagatgaagattcacttctgttgcaactaaaggatggtttttctcctgaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttcagccgagatgaagattcacttctgttgcaactaaaggatggtttttctcctgaaact 495

                                                                       
Query: 301 gaggttatttatgtggggtctctgaaggctgatatagatgctagtgagcaggaagaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaggttatttatgtggggtctctgaaggctgatatagatgctagtgagcaggaagaagtt 555

                                                                       
Query: 361 tcccaaaaactgctggaggattttaattgtgttcctacgtttctacctcaagacttacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcccaaaaactgctggaggattttaattgtgttcctacgtttctacctcaagacttacag 615

                                             
Query: 421 aagaagttttatcttggattctg-aaacagcagt 453
           ||||||||||||||||||||||| ||||||||||
Sbjct: 616 aagaagttttatcttggattctgtaaacagcagt 649