Jatropha Genome Database

JcCB0539681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0539681.10 + phase: 0 /partial
         (501 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10566                                                            504   e-142

>KJC_c10566 
          Length = 856

 Score =  504 bits (254), Expect = e-142
 Identities = 254/254 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaggaagaacttatttgggccaaaggacgccacatactcagactatacttgttatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtgaggaagaacttatttgggccaaaggacgccacatactcagactatacttgttatact 195

                                                                       
Query: 61  ggcattgcagattttgtgcctgcggatattgagtctgttgggtatcgagtatttttgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggcattgcagattttgtgcctgcggatattgagtctgttgggtatcgagtatttttgggt 135

                                                                       
Query: 121 cataagcagtactttgtttcttcggacgtgggtgctggaaagatgcagtggtatgcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 cataagcagtactttgtttcttcggacgtgggtgctggaaagatgcagtggtatgcattt 75

                                                                       
Query: 181 cacaaggaaccacccgggggtgtggataggcccaatggtaaaaaggaaaggctgttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  cacaaggaaccacccgggggtgtggataggcccaatggtaaaaaggaaaggctgttgaaa 15

                         
Query: 241 atatttgagggttg 254
           ||||||||||||||
Sbjct: 14  atatttgagggttg 1