Jatropha Genome Database

JcCB0539181.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0539181.10 - phase: 0 
         (324 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03665                                                             52   8e-07
KJC_c01090                                                             52   8e-07

>KJC_c03665 
          Length = 1153

 Score = 52.0 bits (26), Expect = 8e-07
 Identities = 81/98 (82%), Gaps = 1/98 (1%)
 Strand = Plus / Minus

                                                                       
Query: 58  ggtgattccggcgttggaaaatcaaatcttttatcaagatttacgagaaatgaattctgt 117
           ||||||||||| || |||||||| ||| || | || |||||||| |||||||||||||| 
Sbjct: 962 ggtgattccggtgt-ggaaaatcgaatattctttccagatttaccagaaatgaattctgc 904

                                                 
Query: 118 cttgaatctaaatctaccataggtgttgaattcgccac 155
            | ||||| ||||| || || ||||| || ||||||||
Sbjct: 903 ttggaatccaaatccactattggtgtcgagttcgccac 866


>KJC_c01090 
          Length = 738

 Score = 52.0 bits (26), Expect = 8e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 184 gtcaaggcccagatttgggacaccgctggtcaggaaag 221
           ||||| || ||||||||||||||||||||||| |||||
Sbjct: 288 gtcaaagctcagatttgggacaccgctggtcaagaaag 325