Jatropha Genome Database

JcCB0537261.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0537261.10 - phase: 0 /partial
         (938 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04568                                                             56   2e-07

>KJC_c04568 
          Length = 884

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                       
Query: 587 aagaacaagaagcatttataccacttgttgaggaaattatagaggttggaggtggtttta 646
           |||| ||||| | |||||||||| ||||||||||||||| ||| || | ||| || ||||
Sbjct: 438 aagatcaagaggaatttataccaattgttgaggaaattacagaagtagcaggaggattta 379

                                       
Query: 647 gtatagctgatttgttcccttctattaa 674
           || | || |||||||| |||||| ||||
Sbjct: 378 gtcttgcagatttgtttccttctgttaa 351



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 212 ttatgcatcttcagcttggtgaagtt 237
           ||||||||||||||||||||||||||
Sbjct: 813 ttatgcatcttcagcttggtgaagtt 788