Jatropha Genome Database

JcCB0536281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0536281.10 + phase: 2 /partial
         (469 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02122                                                            563   e-160

>KJC_c02122 
          Length = 1295

 Score =  563 bits (284), Expect = e-160
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                        
Query: 129  taagtcccactgcagaagattctaaacctcgcagggtgggtgcacttccaaattatggtt 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 taagtcccactgcagaagattctaaacctcgcagggtgggtgcacttccaaattatggtt 1063

                                                                        
Query: 189  ttagcttcaagtgtgatgagcgagctgagaaaaggagagagttctactccaaacttgagg 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 ttagcttcaagtgtgatgagcgagctgagaaaaggagagagttctactccaaacttgagg 1123

                                                                        
Query: 249  aaaagattcatgcaaaggaagtagaaaagaatacattacaagcaaagtccaaggaaactc 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 aaaagattcatgcaaaggaagtagaaaagaatacattacaagcaaagtccaaggaaactc 1183

                                                                        
Query: 309  aagaagctgagatcaagatgctcaggaagagtttgaactttaaagcaacaccaatgccta 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 aagaagctgagatcaagatgctcaggaagagtttgaactttaaagcaacaccaatgccta 1243

                                                        
Query: 369  gcttctatcaagaacctccaccacctaagctggaactaaaaaag 412
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 gcttctatcaagaacctccaccacctaagctggaactaaaaaag 1287



 Score =  240 bits (121), Expect = 2e-63
 Identities = 128/129 (99%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaatggctcagttacatcaaattcacaggctaaaacagactttcaaaagcatatcatt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 772 tcaaatggctcagttacatcaaattcacaggc-aaaacagactttcaaaagcatatcatt 830

                                                                       
Query: 61  taatgagaggcaagttcaggcatcaaagcaatctgggaagtctgatgtggcatcctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 taatgagaggcaagttcaggcatcaaagcaatctgggaagtctgatgtggcatcctctga 890

                    
Query: 121 aggcctcat 129
           |||||||||
Sbjct: 891 aggcctcat 899