Jatropha Genome Database

JcCB0534601.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0534601.10 - phase: 0 /partial
         (611 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10070                                                            961   0.0  

>KJC_c10070 
          Length = 613

 Score =  961 bits (485), Expect = 0.0
 Identities = 492/493 (99%), Gaps = 1/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 28  gcctttcgctttggtgctgataaggagtcattaagagaacctcgagtagttcgggtgggt 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcctttcgctttggtgctgataaggagtcattaagagaacctcgagtagttcgggtgggt 181

                                                                       
Query: 88  cttattcagaattccatagctcttccaacaacagcttcttttgtggaccagaagagggct 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cttattcagaattccatagctcttccaacaacagcttcttttgtggaccagaagagggct 241

                                                                       
Query: 148 atttttcagaaattgaagccaatgattgatgctgcaggttcttcaggagtcaacatatta 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atttttcagaaattgaagccaatgattgatgctgcaggttcttcaggagtcaacatatta 301

                                                                       
Query: 208 tgcttgcaagaagcatggatgatgccatttgcattttgcactcgggagaaaagatggtgt 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgcttgcaagaagcatggatgatgccatttgcattttgcactcgggagaaaagatggtgt 361

                                                                       
Query: 268 gaatttgcagagcctatagatggggaatcaacacaatttcttcaggaatttgcacaaaag 327
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaatt-gcagagcctatagatggggaatcaacacaatttcttcaggaatttgcacaaaag 420

                                                                       
Query: 328 tacaacatggtcatcataagtccgattcttgagagagatgataatcatggagagactctt 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaacatggtcatcataagtccgattcttgagagagatgataatcatggagagactctt 480

                                                                       
Query: 388 tggaacactgcaattataattggaaatcatggtaacataattggcaagcatagaaagaac 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggaacactgcaattataattggaaatcatggtaacataattggcaagcatagaaagaac 540

                                                                       
Query: 448 catatacctagagttggtgacttcaatgaaagcacatattatatggaaggaaataccggg 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catatacctagagttggtgacttcaatgaaagcacatattatatggaaggaaataccggg 600

                        
Query: 508 catcctgtgtttg 520
           |||||||||||||
Sbjct: 601 catcctgtgtttg 613