Jatropha Genome Database
- JcCB0532351.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0532351.10 - phase: 2 /partial
(963 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00062 1895 0.0
KJC_c00182 147 6e-35
KJC_s19400 94 7e-19
KJC_s18837 62 3e-09
>KJC_c00062
Length = 1646
Score = 1895 bits (956), Expect = 0.0
Identities = 956/956 (100%)
Strand = Plus / Minus
Query: 1 cagtacattccaagaaattgctggaagcaaggacactgttggtcaatatgagagccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 cagtacattccaagaaattgctggaagcaaggacactgttggtcaatatgagagccacac 1008
Query: 61 agctttcacccttcctgggctctacagagtcgttcatggtattgatgtgtttgatcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 agctttcacccttcctgggctctacagagtcgttcatggtattgatgtgtttgatcccaa 948
Query: 121 attcaacattgtctcccctggtgctgacatgagcatatacttcgcctacaccgaggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 attcaacattgtctcccctggtgctgacatgagcatatacttcgcctacaccgaggagaa 888
Query: 181 acgcaggttgactgctttccacccagaaattgaggagctgctctacagccaagttgagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 acgcaggttgactgctttccacccagaaattgaggagctgctctacagccaagttgagaa 828
Query: 241 cgaagaacacttatgcgtgctaaaggatcgcaacaagccaattattttcaccatggcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cgaagaacacttatgcgtgctaaaggatcgcaacaagccaattattttcaccatggcaag 768
Query: 301 gctggacagagttaagaatttaagcggtcttgttgaatggtatggaaagaacgccaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gctggacagagttaagaatttaagcggtcttgttgaatggtatggaaagaacgccaagct 708
Query: 361 acgtgaattggctaaccttgttgtagttggtggtgatagaagaaaggagtctaaagatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acgtgaattggctaaccttgttgtagttggtggtgatagaagaaaggagtctaaagatct 648
Query: 421 tgaagagcaagctgaaatgaagaaaatgcatgctcttattgagcaatacaatttgaatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgaagagcaagctgaaatgaagaaaatgcatgctcttattgagcaatacaatttgaatgg 588
Query: 481 ccagttcagatggatttcttctcagatgaaccgagtgaggaatggggaactctatcggta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccagttcagatggatttcttctcagatgaaccgagtgaggaatggggaactctatcggta 528
Query: 541 catttgtgacacaaagggagtttttgtgcagcctgctttatatgaagcttttggcttgac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 catttgtgacacaaagggagtttttgtgcagcctgctttatatgaagcttttggcttgac 468
Query: 601 tgttgttgaggccatgacttgtggtttgccaacttttgccacatgcaatggtggccctgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgttgttgaggccatgacttgtggtttgccaacttttgccacatgcaatggtggccctgc 408
Query: 661 tgagatcattgtgcatggaaaatctggcttcaacattgatccttaccatggcgaacaggc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgagatcattgtgcatggaaaatctggcttcaacattgatccttaccatggcgaacaggc 348
Query: 721 tgctcagcttcttgtcgacttcttcgagaagtgcaaggtagatccctctcactgggacaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgctcagcttcttgtcgacttcttcgagaagtgcaaggtagatccctctcactgggacaa 288
Query: 781 aatctcccaaggaggtctgcaacgtatccaagagaagtatacctggcaaatttactctca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aatctcccaaggaggtctgcaacgtatccaagagaagtatacctggcaaatttactctca 228
Query: 841 aaggctattgactctcactggtgtatatggcttctggaaacatgtatctaaactcgaccg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aaggctattgactctcactggtgtatatggcttctggaaacatgtatctaaactcgaccg 168
Query: 901 ccgtgagagccggcgctaccttgagatgttctatgctctcaagtacaggaaattgg 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ccgtgagagccggcgctaccttgagatgttctatgctctcaagtacaggaaattgg 112
>KJC_c00182
Length = 2760
Score = 147 bits (74), Expect = 6e-35
Identities = 155/182 (85%)
Strand = Plus / Minus
Query: 521 aatggggaactctatcggtacatttgtgacacaaagggagtttttgtgcagcctgcttta 580
||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 763 aatggtgaactctatcgttacatagctgacacaaaaggagtttttgtgcagcctgcattt 704
Query: 581 tatgaagcttttggcttgactgttgttgaggccatgacttgtggtttgccaacttttgcc 640
|||||||||||||| |||||||||| ||||||||||||||||| | ||||| || |||
Sbjct: 703 tatgaagcttttgggctgactgttgtggaggccatgacttgtggcctcccaacattcgcc 644
Query: 641 acatgcaatggtggccctgctgagatcattgtgcatggaaaatctggcttcaacattgat 700
|| ||| ||||||| ||||| ||||| |||| |||||| | ||| || ||| ||||||||
Sbjct: 643 acttgccatggtggtcctgccgagattattgagcatggtatatcgggattccacattgat 584
Query: 701 cc 702
||
Sbjct: 583 cc 582
Score = 79.8 bits (40), Expect = 1e-14
Identities = 109/132 (82%)
Strand = Plus / Minus
Query: 10 ccaagaaattgctggaagcaaggacactgttggtcaatatgagagccacacagctttcac 69
|||||||||||| |||| ||| | ||||||||||| ||||| || ||||| ||||||||
Sbjct: 1277 ccaagaaattgcaggaacgaagaatactgttggtcagtatgaaagtcacactgctttcac 1218
Query: 70 ccttcctgggctctacagagtcgttcatggtattgatgtgtttgatcccaaattcaacat 129
|| || || | || |||| |||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 1217 tctccccggattatatcgagttgttcatggaattgatgtctttgatcccaagttcaatat 1158
Query: 130 tgtctcccctgg 141
|||||| |||||
Sbjct: 1157 tgtctctcctgg 1146
>KJC_s19400
Length = 396
Score = 93.7 bits (47), Expect = 7e-19
Identities = 99/115 (86%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 565 tgtgcagcctgc-tttatatgaagcttttggcttgactgttgttgaggccatgacttgtg 623
|||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 123 tgtgcagcctgcatttttatgaagcttttgggctgactgttgtggaggccatgacttgtg 64
Query: 624 gtttgccaacttttgccacatgcaatggtggccctgctgagatcattgtgcatgg 678
| | ||||| || ||||| ||| ||||||| ||||| ||||| |||| ||||||
Sbjct: 63 gcctcccaacattcgccacttgccatggtggtcctgccgagattattgagcatgg 9
Score = 54.0 bits (27), Expect = 6e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 521 aatggggaactctatcggtacatttgtgacacaaagggagtttttgtgcag 571
||||| ||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct: 259 aatggtgaactctatcgttacatagctgacacaaaaggagtttttgtgcag 209
>KJC_s18837
Length = 503
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 87 gagtcgttcatggtattgatgtgtttgatcccaaattcaacattgtctcccctgg 141
|||| |||||||| |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 2 gagttgttcatggaattgatgtctttgatcccaagttcaatattgtctctcctgg 56