Jatropha Genome Database

JcCB0510081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0510081.10 - phase: 0 
         (357 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00228                                                            680   0.0  

>KJC_c00228 
          Length = 941

 Score =  680 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 15  gatctttgagaagaacccaactaagatcaagaattatggcatttggttgcgttaccaaag 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatctttgagaagaacccaactaagatcaagaattatggcatttggttgcgttaccaaag 625

                                                                       
Query: 75  ccgaactggctatcacaacatgtacaaggaatacagagataccactttgaatggtgctgt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccgaactggctatcacaacatgtacaaggaatacagagataccactttgaatggtgctgt 565

                                                                       
Query: 135 ggaacagatgtacactgagatggcttcccgacacagagtaaggttcccatgcattcagat 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaacagatgtacactgagatggcttcccgacacagagtaaggttcccatgcattcagat 505

                                                                       
Query: 195 aatcaagactggcaccattccagctaagctctgcaaaagagaaagcagcaagcaattcca 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatcaagactggcaccattccagctaagctctgcaaaagagaaagcagcaagcaattcca 445

                                                                       
Query: 255 caactcgaagatcaagttcccattggtgttcaagaaggttaggccaccaaccaggaagct 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caactcgaagatcaagttcccattggtgttcaagaaggttaggccaccaaccaggaagct 385

                                                      
Query: 315 taggacaacatacaaggcatccaggcccaacctatttatgtaa 357
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taggacaacatacaaggcatccaggcccaacctatttatgtaa 342