Jatropha Genome Database

JcCB0499871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0499871.10 - phase: 0 
         (834 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12931                                                            856   0.0  

>KJC_c12931 
          Length = 927

 Score =  856 bits (432), Expect = 0.0
 Identities = 453/456 (99%), Gaps = 3/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 382 ccattgcatccgtccatgcaaccataccctttcttcggaaatcagaatcctgcagttatc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccattgcatccgtccatgcaaccataccctttcttcggaaatcagaatcctgcagttatc 298

                                                                       
Query: 442 cacaatccatgttcaacttttgttccatatgtgacccctaacaccttggttgatcagcag 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cacaatccatgttcaacttttgttccatatgtgacccctaacaccttggttgatcagcag 358

                                                                       
Query: 502 tctacccaacgtgcatcttcatttgcacagcctgccagtggatcccatgtttcaggaaaa 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tctacccaacgtgcatcttcatttgcacagcctgccagtggatcccatgtttcaggaaaa 418

                                                                       
Query: 562 caagattccaagattaaattgtcgggggagagcaaggttggaaaaagtttgg-actcaaa 620
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 419 caagattccaagattaaattgtcgggggagagcaaggttggaaaaagtttggaactcaaa 478

                                                                       
Query: 621 tgacgttacaacagagttggagttgaagactccaggatctatgacagatcaggatttatc 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgacgttacaacagagttggagttgaagactccaggatctatgacagatcaggatttatc 538

                                                                       
Query: 681 ctcgggacacaaaaagt-ccaaaaaat-ctccagggaaggaaaatagtgttacagaaggg 738
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 539 ctcgggacacaaaaagtaccaaaaaatactccagggaaggaaaatagtgttacagaaggg 598

                                                                       
Query: 739 agttgttcaagtaggtgttcttcagctcgcagtgtccaggatagctcatccactagcata 798
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agttgttcaagtaggtgttcttcagctcgcagtgtccaggatagctcatccactagcata 658

                                               
Query: 799 gttggtagcacaaaggcagatgacttaggccagtga 834
           ||||||||||||||||||||||||||||||||||||
Sbjct: 659 gttggtagcacaaaggcagatgacttaggccagtga 694