Jatropha Genome Database

JcCB0496181.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0496181.10 - phase: 0 /pseudo
         (765 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01228                                                            198   1e-50
KJC_c12756                                                            109   1e-23

>KJC_c01228 
          Length = 980

 Score =  198 bits (100), Expect = 1e-50
 Identities = 278/336 (82%), Gaps = 1/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 340 aaaggaggtgctttcaccggtgaagttagtgctgaaatgcttgtgaatctggctattctg 399
           ||||| |||||||||||||| || ||||||||||| ||||| || ||| ||  |||||  
Sbjct: 217 aaaggtggtgctttcaccggagaggttagtgctgagatgctagtaaatttgaatattcca 276

                                                                       
Query: 400 tgggtcattctcggccattctgaaaggagacttctcttaactgagtcaaatgagtttgtt 459
           ||||||||||| |||||||||||| | |||   || |||| |||||||||||||||||||
Sbjct: 277 tgggtcattctaggccattctgaacgaagagcacttttaaatgagtcaaatgagtttgtt 336

                                                                       
Query: 460 ggagataaggttgcatatgcactttcacaaggtttaaaggtgattgcttgtgtgggtgag 519
           | |||||||||||| ||||||||||| |||||||| || |||||||||||| | ||||||
Sbjct: 337 gcagataaggttgcttatgcactttctcaaggtttgaaagtgattgcttgtattggtgag 396

                                                                       
Query: 520 actctcgaacagcgtgaagcaggatctaccttggaagttgttgctgcacaaaccaaagca 579
           || || || ||  | ||| ||||||||||  |||  ||||||||||||||||| ||||||
Sbjct: 397 acacttgagcaaagagaatcaggatctacagtggctgttgttgctgcacaaacaaaagca 456

                                                                       
Query: 580 atagcagcacgtataaagaattggacagatgttgttttggcatatgagcctgtgtgggct 639
           |||||||     |||   || ||| || ||||||||||||| ||||| || || ||||| 
Sbjct: 457 atagcagataaaatatcaaactgggcaaatgttgttttggcttatgaaccagtttgggcc 516

                                               
Query: 640 attggaacaggggaaggttgcaactcctgctcaggc 675
           ||||| ||| || ||||||||||| |||||||||||
Sbjct: 517 attggtaca-ggaaaggttgcaacacctgctcaggc 551



 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                      
Query: 1  atggccaggaagtttttcgtcggtggcaattggaaatgcaatggaaccactgaagatgtg 60
          |||| ||| ||||| |||||||| ||||| ||||||||||||||||| ||||| || |||
Sbjct: 7  atgggcagaaagttcttcgtcggcggcaactggaaatgcaatggaacaactgaggaggtg 66

                  
Query: 61 aagaagat 68
          ||||||||
Sbjct: 67 aagaagat 74


>KJC_c12756 
          Length = 450

 Score =  109 bits (55), Expect = 1e-23
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                       
Query: 364 gttagtgctgaaatgcttgtgaatctggctattctgtgggtcattctcggccattctgaa 423
           ||||||||||| ||||| || ||| ||  |||||  ||||||||||| ||||||||||||
Sbjct: 161 gttagtgctgagatgctagtaaatttgaatattccatgggtcattctaggccattctgaa 102

                                                                       
Query: 424 aggagacttctcttaactgagtcaaatgagtttgttggagataaggttgcatatgcactt 483
            | |||   || |||| |||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 101 cgaagagcacttttaaatgagtcaaatgagtttgttgcagataaggttgcttatgcactt 42

                      
Query: 484 tcacaaggttt 494
           || ||||||||
Sbjct: 41  tctcaaggttt 31