Jatropha Genome Database

JcCB0492781.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0492781.10 - phase: 0 /partial
         (601 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05084                                                            591   e-169

>KJC_c05084 
          Length = 1013

 Score =  591 bits (298), Expect = e-169
 Identities = 305/306 (99%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   aggttatggtgaaaggatcgcaagggcatgctggcactgttccaatgtctttacgccaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggttatggtgaaaggatcgcaagggcatgctggcactgttccaatgtctttacgccaag 246

                                                                       
Query: 65  acccgatggccgctgctgctgagttaatagtattgttggaaagcctttgtaaacacccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acccgatggccgctgctgctgagttaatagtattgttggaaagcctttgtaaacacccta 186

                                                                       
Query: 125 aggattttctgtcttatgatggttactgcaatgattccatagtggaatcactttccagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aggattttctgtcttatgatggttactgcaatgattccatagtggaatcactttccagtt 126

                                                                       
Query: 185 cccttgtttgtaccgttggggagatatctacctggccaagtgctagtaatgtaattccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cccttgtttgtaccgttggggagatatctacctggccaagtgctagtaatgtaattccag 66

                                                                       
Query: 245 gccaggtaacttttaccgtggatttacgagcaatggatgatatgggacgtgaagctgttc 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gccaggtaac-tttaccgtggatttacgagcaatggatgatatgggacgtgaagctgttc 7

                 
Query: 305 tttatg 310
           ||||||
Sbjct: 6   tttatg 1