Jatropha Genome Database

JcCB0473701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0473701.10 + phase: 1 /partial
         (191 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00163                                                            365   e-101
KJC_s14859                                                            113   1e-25

>KJC_c00163 
          Length = 1650

 Score =  365 bits (184), Expect = e-101
 Identities = 191/192 (99%), Gaps = 1/192 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtgcccgatgtgtagctactctattgcatgagatgaaacgccggggtagagattgtcgct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 gtgcccgatgtgtagctactctattgcatgagatgaaacgccggggtagagattgtcgct 1394

                                                                        
Query: 61   tcggagtggtgtcaatgtgcataggcacaggaatgggagcagctgctgtttttgaga-gg 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1395 tcggagtggtgtcaatgtgcataggcacaggaatgggagcagctgctgtttttgagaggg 1454

                                                                        
Query: 120  ggggatggctgtgatgagctgtgtaatgcccggaaagcagaaactgataagctgttatca 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1455 ggggatggctgtgatgagctgtgtaatgcccggaaagcagaaactgataagctgttatca 1514

                        
Query: 180  aaggatgctcta 191
            ||||||||||||
Sbjct: 1515 aaggatgctcta 1526


>KJC_s14859 
          Length = 180

 Score =  113 bits (57), Expect = 1e-25
 Identities = 64/65 (98%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 128 ctgtgatgagctgtgtaatg-cccggaaagcagaaactgataagctgttatcaaaggatg 186
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctgtgatgagctgtgtaatgtcccggaaagcagaaactgataagctgttatcaaaggatg 121

                
Query: 187 ctcta 191
           |||||
Sbjct: 120 ctcta 116