Jatropha Genome Database

JcCB0473001.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0473001.10 + phase: 1 /partial
         (278 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00154                                                            107   1e-23
KJC_s16764                                                            100   3e-21
KJC_c00738                                                             52   7e-07

>KJC_c00154 
          Length = 1339

 Score =  107 bits (54), Expect = 1e-23
 Identities = 108/126 (85%)
 Strand = Plus / Plus

                                                                       
Query: 71  attatgtgacaaggctaaggagatactaatgcaagaaagcaatgttcagcctgtgaaaag 130
           ||||||||| || |||||||| ||  | ||| |||||||||||||||||||||| |||||
Sbjct: 232 attatgtgagaaagctaaggaaattttgatggaagaaagcaatgttcagcctgttaaaag 291

                                                                       
Query: 131 ccctgtgacaatctgtggcgatattcatgggcagtttcatgatcttgcagaactttttcg 190
           ||| || ||||| ||||| ||||| ||||| || ||||||||||| || |||||||||||
Sbjct: 292 ccccgttacaatatgtggtgatatccatggtcaatttcatgatctggctgaactttttcg 351

                 
Query: 191 tattgg 196
            |||||
Sbjct: 352 aattgg 357


>KJC_s16764 
          Length = 446

 Score = 99.6 bits (50), Expect = 3e-21
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                       
Query: 71  attatgtgacaaggctaaggagatactaatgcaagaaagcaatgttcagcctgtgaaaag 130
           ||||||||| || |||||||| ||  | ||| |||||||||||||||||||||| |||||
Sbjct: 84  attatgtgagaaagctaaggaaattttgatggaagaaagcaatgttcagcctgttaaaag 143

                                                                     
Query: 131 ccctgtgacaatctgtggcgatattcatgggcagtttcatgatcttgcagaacttttt 188
           ||| || ||||| ||||| ||||| ||||| || ||||||||||| || |||||||||
Sbjct: 144 ccccgttacaatatgtggtgatatccatggtcaatttcatgatctggctgaacttttt 201


>KJC_c00738 
          Length = 1219

 Score = 52.0 bits (26), Expect = 7e-07
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 144  tgtggcgatattcatgggcagtttcatgat 173
            ||||||||||||||||| ||||||||||||
Sbjct: 1015 tgtggcgatattcatggacagtttcatgat 986