Jatropha Genome Database

JcCB0463991.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0463991.10 - phase: 2 /pseudo/partial
         (933 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04587                                                            139   1e-32

>KJC_c04587 
          Length = 574

 Score =  139 bits (70), Expect = 1e-32
 Identities = 197/238 (82%), Gaps = 1/238 (0%)
 Strand = Plus / Minus

                                                                       
Query: 426 gtgatgatgctgggtctctccttgtttttgatgaggttcaatgtggcttgggccgaactg 485
           |||||||||||||| ||||||| || ||||||||||| ||||| || || ||| ||||||
Sbjct: 574 gtgatgatgctggg-ctctcctggtctttgatgaggtgcaatgcggtttaggcagaactg 516

                                                                       
Query: 486 gttgtctttgggcacatgaagcatacagtgtagtcccagacataatgaccattgccaaac 545
           | | ||| ||||| |||||||||||  ||||  | ||||| ||||||||  |||||||||
Sbjct: 515 gatatctgtgggcccatgaagcatatggtgtctttccagatataatgacacttgccaaac 456

                                                                       
Query: 546 ctcttgctggaggccttcccattggagctgcattaatgagcgaaagagttgcagctgcca 605
           | |||||||||||| | || ||||||||  ||||  |||  |||||||||||  | || |
Sbjct: 455 cacttgctggaggcttacctattggagccacattggtgactgaaagagttgcttcggcta 396

                                                                     
Query: 606 tgaagtatggagaacatggaagcacttttgctggtggacctcttgtctgcaatgctgc 663
           | || | ||| || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 395 taaattttggtgatcatggaagtacttttgctggtggacctcttgtctgtaatgctgc 338