Jatropha Genome Database

JcCB0463411.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0463411.10 - phase: 2 /pseudo/partial
         (259 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10136                                                             90   3e-18

>KJC_c10136 
          Length = 593

 Score = 89.7 bits (45), Expect = 3e-18
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                       
Query: 104 ttcttctatgtcaatctcgccaagagatacatgcagcaacacaatgaagttgagctgtct 163
           |||||||| || || |||||||||||||| |||||||||||||| || || || ||||||
Sbjct: 559 ttcttctacgttaacctcgccaagagatatatgcagcaacacaacgaggtggaactgtct 500

                                        
Query: 164 gctcttggaatggctatagcaacagttgt 192
           || ||||||||||||||||| || |||||
Sbjct: 499 gcacttggaatggctatagccactgttgt 471