Jatropha Genome Database

JcCB0459051.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0459051.10 + phase: 0 
         (537 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11760                                                            537   e-153

>KJC_c11760 
          Length = 393

 Score =  537 bits (271), Expect = e-153
 Identities = 278/279 (99%), Gaps = 1/279 (0%)
 Strand = Plus / Plus

                                                                       
Query: 242 cacaacatggaggatcaacaatgcttgatcttcagcaggctcttgaagattacttgccag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cacaacatggaggatcaacaatgcttgatcttcagcaggctcttgaagattacttgccag 60

                                                                       
Query: 302 tgctattggggctagttgaaaatggaaaccagctacaacaagagttgcaattctcttggc 361
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgctattggggctagttgaaa-tggaaaccagctacaacaagagttgcaattctcttggc 119

                                                                       
Query: 362 taaaccaggaggacactgcagaggagactaccatgtcaaacttttggtacgagttactat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 taaaccaggaggacactgcagaggagactaccatgtcaaacttttggtacgagttactat 179

                                                                       
Query: 422 cagttttgcacttgatggccatgttatcgttatcacaggccaatttattgcttctttcta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cagttttgcacttgatggccatgttatcgttatcacaggccaatttattgcttctttcta 239

                                                  
Query: 482 taacctctaatgacggtcatctgtcaaaattatcagaag 520
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taacctctaatgacggtcatctgtcaaaattatcagaag 278