Jatropha Genome Database
- JcCB0458961.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0458961.10 + phase: 0 /pseudo/partial
(760 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01027 684 0.0
>KJC_c01027
Length = 2632
Score = 684 bits (345), Expect = 0.0
Identities = 352/353 (99%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 88 aggttttgaattggggttactcaatggaaagtcccaattcattagtaatctgggaagctc 147
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 aggttttgaattggg-ttactcaatggaaagtcccaattcattagtaatctgggaagctc 902
Query: 148 aatttggtgactttgctaatggggcccaagtgatatttgaccagttcctgagcagtggtg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aatttggtgactttgctaatggggcccaagtgatatttgaccagttcctgagcagtggtg 842
Query: 208 aatcaaaatggttgcgtcaaactgggctagttgtgcttcttcctcatggatatgacggtc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aatcaaaatggttgcgtcaaactgggctagttgtgcttcttcctcatggatatgacggtc 782
Query: 268 agggtcctgaacattcaagtgcacggttggaacgcttccttcagatgagtgatgataatc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agggtcctgaacattcaagtgcacggttggaacgcttccttcagatgagtgatgataatc 722
Query: 328 cttatgttattcctgaaatggacccaactctccggaaacaaattcaggaatgtaactggc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cttatgttattcctgaaatggacccaactctccggaaacaaattcaggaatgtaactggc 662
Query: 388 aggttgtgaatgtcacaacccctgctaattacttccatgtcttgcggcgccag 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aggttgtgaatgtcacaacccctgctaattacttccatgtcttgcggcgccag 609
Score = 581 bits (293), Expect = e-166
Identities = 293/293 (100%)
Strand = Plus / Minus
Query: 441 cctacttcgtcacaaggactgcaaatcaaatctgtctgagtttgacgatgtccaaggcca 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctacttcgtcacaaggactgcaaatcaaatctgtctgagtttgacgatgtccaaggcca 502
Query: 501 tcctggctttgacaaacagggaaccagatttaagcgtctgataaaggatcagaatgacca 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctggctttgacaaacagggaaccagatttaagcgtctgataaaggatcagaatgacca 442
Query: 561 tgctgatcttgaagagggtatcagacgtctggttctttgctccggaaaggtttattatga 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgatcttgaagagggtatcagacgtctggttctttgctccggaaaggtttattatga 382
Query: 621 gcttgatgaagaacgcaaaaagactggtgcaaaggatgttgcaatttgtagagtggagca 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgatgaagaacgcaaaaagactggtgcaaaggatgttgcaatttgtagagtggagca 322
Query: 681 gctgtgtccattcccatatgatctgatccagcgtgagcttaagcgatatccaa 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgtccattcccatatgatctgatccagcgtgagcttaagcgatatccaa 269
Score = 176 bits (89), Expect = 5e-44
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1 gttcatgatcaagaaaacggggagaagtattgccctctggaccatgttgttatgaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 gttcatgatcaagaaaacggggagaagtattgccctctggaccatgttgttatgaaccaa 1014
Query: 61 gatgaggagatgtttactgtcagcaacag 89
|||||||||||||||||||||||||||||
Sbjct: 1013 gatgaggagatgtttactgtcagcaacag 985